PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G18160.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 277aa    MW: 31326.2 Da    PI: 10.152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G18160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-18139226196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k++++s+v++  +l lp +f++ h +++ ++ +++lede+g +++  +   +++ +  l++GW++F+  ++L++gD++vF+l + ++f  ++
  OPUNC05G18160.1 139 FVKTMVRSHVSSCFWLGLPTRFCKLH-LPP-REYKMVLEDEEGGEFDSVY--IGNRTG--LSGGWRGFAMHHNLEDGDSLVFELAEPDRF--KI 224
                      89*********************877.444.6689***************..555444..***********************9876777..55 PP

                      EE CS
               B3  95 kv 96 
                       +
  OPUNC05G18160.1 225 YI 226
                      55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-20131229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-23132228IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-26137228No hitNo description
PfamPF023624.4E-17139227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.619139230IPR003340B3 DNA binding domain
SMARTSM010193.2E-23139230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MPAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TRASPKPRKK  60
FEVGATEVRR SSRARNSVSY KENFDELDSF LRRGRGSRIR NTEPGRDYTG RIASYEQQQR  120
AFKRAERLQN SLDPVNPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPREY KMVLEDEEGG  180
EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAA DEDANESEPA  240
DGDKKKTKTV DAAEQDGSSN AAETLKGAKR RKLRGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264270LKGAKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687050.0AK068705.1 Oryza sativa Japonica Group cDNA clone:J013160D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639491.11e-171B3 domain-containing protein Os05g0481400 isoform X2
SwissprotQ5KQI41e-172Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A0E0L3W60.0A0A0E0L3W6_ORYPU; Uncharacterized protein
STRINGOPUNC05G18160.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.18e-44B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]