PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G17980.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 317aa    MW: 33357.8 Da    PI: 4.4486
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G17980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.15.8e-26120180259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+ WrKYGqKe+k+s++pr YYrC+++   gC+++++v++s++dp++ +itY g+H+++
  OPUNC05G17980.1 120 EDGFLWRKYGQKEIKNSKHPRLYYRCSYKeddGCTATRHVQQSEDDPSLYVITYFGDHTCS 180
                      7***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.31114182IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-26114180IPR003657WRKY domain
SuperFamilySSF1182901.57E-24115181IPR003657WRKY domain
SMARTSM007742.2E-38119181IPR003657WRKY domain
PfamPF031069.6E-26120179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MALIATGATA TAAASPAASM ASELMAQGRE SAAVLEALLQ GTSLPPAHGA VHALAAEILR  60
CCDRALAAMR AGGEAESSSS AGMKRKPAAG AATSRKRRAI ANGGGAAPAP TRVEKARTSE  120
DGFLWRKYGQ KEIKNSKHPR LYYRCSYKED DGCTATRHVQ QSEDDPSLYV ITYFGDHTCS  180
CQTAAASAAM DDDDDENLQR FVINFGSATA SSGSPPLLYD DGDVWREAAA TPPSSRQSRC  240
SPEGDGQESG VKMSKEEPVD SCPAPSAVSS PADAVSCASP ALEPDLLGFL NWDDFGDSSF  300
IDADEFINFD EIDLFQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22120179968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18397KRKPAAGAATSRKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638904.11e-150probable WRKY transcription factor 70
TrEMBLA0A0E0L3U40.0A0A0E0L3U4_ORYPU; Uncharacterized protein
STRINGOPUNC05G17980.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.16e-21WRKY DNA-binding protein 38