PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G16960.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 172aa    MW: 17893.8 Da    PI: 7.5896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G16960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000494261120
                     EEETTTTEEESSHHHHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                     +kC+ C+k+F++   L  H 
  OPUNC05G16960.1 42 FKCKTCNKTFTSFQALGGHR 61
                     89*********988886665 PP
2zf-C2H210.80.001695117123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cg  F+    L  H+r+H
  OPUNC05G16960.1  95 HPCAVCGVEFRMGQALGGHMRRH 117
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.33E-741117No hitNo description
PfamPF139121.2E-94164IPR007087Zinc finger, C2H2
SMARTSM003550.174264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2844269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SMARTSM003551.495117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.67995122IPR007087Zinc finger, C2H2
PfamPF139121.7E-1095119IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MASGQRAGEG SGGGMVSGGL RPTHVEGGAT NGGGGSARGE YFKCKTCNKT FTSFQALGGH  60
RTGHTRMAAR QRQEHGADTV AVVGTNNQRV SAQWHPCAVC GVEFRMGQAL GGHMRRHRGE  120
ASPPTGAASA AVSSVESPEM LDLNSPPVQE AGEGDQEVER AEQEPRLLNL LV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1172655e-93AC117265.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1281_H05, complete sequence.
GenBankAP0149615e-93AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638878.13e-72zinc finger protein ZAT7
SwissprotQ9LX852e-24ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A0E0L3G11e-121A0A0E0L3G1_ORYPU; Uncharacterized protein
STRINGOPUNC05G16930.11e-122(Oryza punctata)
STRINGOPUNC05G16960.11e-122(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1905489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.18e-24C2H2 family protein