PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G16800.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 627aa    MW: 69126.8 Da    PI: 8.5325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G16800.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-1764110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde+l +av  + g++Wk+Ia+ +   Rt+ qc +rwqk+l
  OPUNC05G16800.2  64 KGGWTPEEDEKLRKAVDIYNGKNWKKIAESFS-DRTEVQCLHRWQKVL 110
                      688*****************************.************986 PP

2Myb_DNA-binding58.21.9e-18116162148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed+ ++++vk++G++ W+ Iar ++ gR +kqc++rw+++l
  OPUNC05G16800.2 116 KGPWTQQEDDVIINLVKKHGPKKWSVIARSLN-GRIGKQCRERWHNHL 162
                      79******************************.*************97 PP

3Myb_DNA-binding51.52.3e-16168211146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + +WT eE+  l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++
  OPUNC05G16800.2 168 KEAWTVEEEHVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 211
                      579*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.29459110IPR017930Myb domain
SuperFamilySSF466892.94E-1862124IPR009057Homeodomain-like
SMARTSM007175.8E-1563112IPR001005SANT/Myb domain
PfamPF002493.3E-1564110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2266118IPR009057Homeodomain-like
CDDcd001675.55E-1467110No hitNo description
PROSITE profilePS5129430.357111166IPR017930Myb domain
SuperFamilySSF466896.24E-31113209IPR009057Homeodomain-like
SMARTSM007171.1E-16115164IPR001005SANT/Myb domain
PfamPF002499.5E-17116162IPR001005SANT/Myb domain
CDDcd001675.89E-15118162No hitNo description
Gene3DG3DSA:1.10.10.604.2E-25119166IPR009057Homeodomain-like
PROSITE profilePS5129421.01167217IPR017930Myb domain
SMARTSM007173.3E-13167215IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-22167217IPR009057Homeodomain-like
PfamPF002495.4E-15168211IPR001005SANT/Myb domain
CDDcd001672.18E-10170213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MPAVKVEEEE EEEEEVEERN PVASSPSVSE GSAHAALASP VAATTPADSV FGRRRKSGPV  60
RRAKGGWTPE EDEKLRKAVD IYNGKNWKKI AESFSDRTEV QCLHRWQKVL DPELIKGPWT  120
QQEDDVIINL VKKHGPKKWS VIARSLNGRI GKQCRERWHN HLDPQIRKEA WTVEEEHVLA  180
RAHCMYGNKW AEIAKLLPGR TDNSIKNHWN SSLRKKMDDY NTRNILPLQP PVVGDDLKQL  240
PKRPPADNHF DLNKEPIICS RDRLGVVHSD PTSHQRASNL KYFKGCADYL SLGQPVTSCE  300
ASAADDSAFD LATQGMRMDS VHDKGTGNNF VCGKVQGINF LGDKGLKINQ ISDKMGCSRQ  360
AKREGEAAIN SGGSSLQSEA HSVGSLCYQI PKMEDIAPAE SPVFTANYVP EHSRNVMHSP  420
NGYTTPSPTH GKGSDQLSVE SILRSAAEKF HGTPSILRRR KRDKPTPAED NDLKIGRLSS  480
DDFHTPIGKS TTDSPQSFKT AALLSLGPMD GQGFSTASGS LDVSPPYRLR SKRLAVLKTV  540
QNHLDFSSDE MSICDTTMKS ACGNSDCANA SSGVSSIQGK KLDEHMIGLE TLTMNFAHTT  600
KTTTNVLKWA RRPDASKLNV VTVPKGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-67632175159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-67632175159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1457464RRRKRDKP
2458463RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067560.0AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637435.10.0transcription factor MYB3R-2-like
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0E0L3E30.0A0A0E0L3E3_ORYPU; Uncharacterized protein
STRINGOPUNC05G16800.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-101myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]