PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G13560.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 342aa    MW: 37442.7 Da    PI: 8.6091
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G13560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like43.75.9e-14164206144
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 
                      k+r  W +eLHerFv++v qL G +kAtP +il l++ ++Lt++
  OPUNC05G13560.1 164 KKRSTWPKELHERFVSVVLQL-GVDKATPNQILPLLNREDLTRD 206
                      6899*****************.********************97 PP
2Response_reg53.71.1e-18271361109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl++d++ + +++++++l + gy +v+  + ++ a+e l+++   +D++l+ +  p  +dG++ll+   + +++lp++v++a +++ ++l++++
  OPUNC05G13560.1  27 VLLIDESTTCLKIITKLLLNCGY-KVTPKTAAQNAVEELRNNPwsYDMVLTELHAPAgIDGFNLLQYAGT-DMDLPVVVFSADDDKRTVLKCVN 118
                      89*********************.99999999999999999999************99********9755.459******************** PP

                      TTESEEEESS--HHHHHH CS
     Response_reg  92 aGakdflsKpfdpeelvk 109
                       Ga d+l+Kp   eel +
  OPUNC05G13560.1 119 SGACDYLVKPLRHEELKN 136
                      **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.3E-3224153No hitNo description
SuperFamilySSF521729.82E-2624149IPR011006CheY-like superfamily
SMARTSM004485.1E-1525138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.14226142IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-1427136IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.54E-1528141No hitNo description
SuperFamilySSF466891.2E-5164207IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-12164207IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-10164207IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVGSSSAAGG NKSKLADEEF TPVGMRVLLI DESTTCLKII TKLLLNCGYK VTPKTAAQNA  60
VEELRNNPWS YDMVLTELHA PAGIDGFNLL QYAGTDMDLP VVVFSADDDK RTVLKCVNSG  120
ACDYLVKPLR HEELKNIWQH VYRRKLRNGR RAAAAGNSSK GEIKKRSTWP KELHERFVSV  180
VLQLGVDKAT PNQILPLLNR EDLTRDQRFR IAITKSKTLP SWSTIPIGGT VHGIPLALQT  240
IGTENNQHLI VPFNWITFVR PRGVDEIGQN GVLGGLVTGN NTIVPTATSV LAKAFGRDMV  300
NGADLSDHGT LIRDSSSTND DGAQNELGET NLAFELMEKK GK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-142CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881540.11e-118two-component response regulator ARR11-like
TrEMBLA0A0E0L2700.0A0A0E0L270_ORYPU; Uncharacterized protein
STRINGOPUNC05G13560.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1706467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-39response regulator 10