PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G11020.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 302aa    MW: 31530.2 Da    PI: 6.8837
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G11020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-192065147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde+l  av+++G+++W++I+++++ gR++k+c++rw + 
  OPUNC05G11020.1 20 KGSWSPEEDEQLRGAVARHGPRNWTAISEEVP-GRSGKSCRLRWCNQ 65
                     799*****************************.***********985 PP
2Myb_DNA-binding57.23.9e-1872115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T++Ed l+v a++++G++ W+tIar +  gRt++++k++w++
  OPUNC05G11020.1  72 RRPFTPDEDALIVAAHAKYGNK-WATIARLLD-GRTDNSVKNHWNS 115
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.391566IPR017930Myb domain
SuperFamilySSF466893.06E-3018113IPR009057Homeodomain-like
SMARTSM007172.3E-161968IPR001005SANT/Myb domain
PfamPF002492.4E-192065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-242173IPR009057Homeodomain-like
CDDcd001679.46E-162264No hitNo description
PROSITE profilePS5129425.25667121IPR017930Myb domain
SMARTSM007172.7E-1571119IPR001005SANT/Myb domain
PfamPF002495.3E-1572115IPR001005SANT/Myb domain
CDDcd001672.81E-1274117No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2274120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLIHGEGSSS AAAAVAAKIK GSWSPEEDEQ LRGAVARHGP RNWTAISEEV PGRSGKSCRL  60
RWCNQLSPGV HRRPFTPDED ALIVAAHAKY GNKWATIARL LDGRTDNSVK NHWNSSLRRN  120
RRAAAAAAAA ASVSYQSMDL TEEDNDDEGT SDDSVAIPAQ SSPASVVAAV PVLPPPPPPP  180
AKRLCVAAPT GVEHRAPPPD PPTSLSLSPP GAAAPVAISA STVVGGSSAR AEEEAVAREK  240
ARMEQDPWLM AMMRQMITEE VQRQVSVVYS LVASSAAVAA QTGNAGGVGR KGPDGHPSNG  300
QD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-34191193103MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-34191193103C-Myb DNA-Binding Domain
1msf_C7e-34191193103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1362210.0AC136221.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077J17, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639574.21e-158transcription factor MYB77
SwissprotQ9SN121e-58MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A0E0L1C20.0A0A0E0L1C2_ORYPU; Uncharacterized protein
STRINGOPUNC05G11020.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.14e-53myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]