PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC05G09830.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 345aa MW: 39826.6 Da PI: 5.2552

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G09830.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.6	3.2e-21	84	171	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 ++Y++YA++ GF +++s+ ++s+ +++ +++f C e +++e+ + +++rr++ + +tgCka+++v k+ d+kw+vt ++l+HnH+ OPUNC05G09830.1 84 NYYDDYARKWGFITKISSCRRSQITKQYNRYEFACHSERSSRESGASaGSRSRRSSRVLKTGCKARMVVVKR-DEKWVVTIVDLDHNHP 171 69**********************************999998877567888899999*******99.9************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.7E-20	84	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MEDKDDRASA EITTDQDNHL KDALIQVFAA TSEQQEGEGA EGVQDEEIGE DVEGVRDEEI 60 GGTNSKPDKP YVGMEFRDKD EAKNYYDDYA RKWGFITKIS SCRRSQITKQ YNRYEFACHS 120 ERSSRESGAS AGSRSRRSSR VLKTGCKARM VVVKRDEKWV VTIVDLDHNH PPLNPSALMS 180 LKPHRLITDE DHDLLEFLRT NKIPTQRIMS VLWFEDDLRH CIDESFTVEE FERRWAAVLD 240 RYNLASNKYM QDLYEIREKW VPCYFMDSFF PFMSIIQQSE NGKGITMGES SMIAEKVVSE 300 SCLKDPTKIR PAAFDNNSES ARKRNKVIKA VQDLRTPFQV TKLTD

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MEDKDDRASA EITTDQDNHL KDALIQVFAA TSEQQEGEGA EGVQDEEIGE DVEGVRDEEI  60
GGTNSKPDKP YVGMEFRDKD EAKNYYDDYA RKWGFITKIS SCRRSQITKQ YNRYEFACHS  120
ERSSRESGAS AGSRSRRSSR VLKTGCKARM VVVKRDEKWV VTIVDLDHNH PPLNPSALMS  180
LKPHRLITDE DHDLLEFLRT NKIPTQRIMS VLWFEDDLRH CIDESFTVEE FERRWAAVLD  240
RYNLASNKYM QDLYEIREKW VPCYFMDSFF PFMSIIQQSE NGKGITMGES SMIAEKVVSE  300
SCLKDPTKIR PAAFDNNSES ARKRNKVIKA VQDLRTPFQV TKLTD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC124141	0.0	AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence.
GenBank	AK122018	0.0	AK122018.1 Oryza sativa Japonica Group cDNA clone:J033111M10, full insert sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639432.1	1e-127	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0E0L0Y4	0.0	A0A0E0L0Y4_ORYPU; Uncharacterized protein
STRING	OPUNC05G09830.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2639	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	2e-13	FAR1-related sequence 3