PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G04000.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 397aa    MW: 44241.2 Da    PI: 9.9441
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G04000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-122569147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rW+ eE++++++a  ++G + Wk+I   +  ++t+ q++s+ qk+
  OPUNC05G04000.1 25 RERWSGEEHDRFLHALMLFGRD-WKRIQGFVA-TKTAIQIRSHAQKH 69
                     78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.93E-151975IPR009057Homeodomain-like
PROSITE profilePS5129414.4962074IPR017930Myb domain
SMARTSM007172.8E-92472IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.2E-142472IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.6E-72569IPR009057Homeodomain-like
PfamPF002491.6E-92569IPR001005SANT/Myb domain
CDDcd001673.78E-72770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MTTTMAPMAG TKKKARKPYT ITRPRERWSG EEHDRFLHAL MLFGRDWKRI QGFVATKTAI  60
QIRSHAQKHF LKARKFGLAG GLPPPLHPRR AALLRANAAA ADMMPPLWLP SAGSGSIGCS  120
PPPSGVQQSM SHWPAACYSP EDSFRPLIHS YDDDCSFIGT PNCIGSGGES WIGDAAFFSR  180
DETILLPISP DDLGFAQVYK FVGDMFGSGE RRPVEAHLRR LQGMDPAISE TIHHRLPLLP  240
MFCRFGRDWK RIQRFVATKT AIQVAIDSSP SARSMAGFRM EDRLGFFTFA FQVLIDLPWF  300
IIQILSHAQK HFLKARNGLG KSWLGDAAFF LQDETILLPI SPDDLGFAMV YKFVGDVLGS  360
GERRPVEAHL RRLQGMDPAI SETILLVLKN LEANLVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241441e-98AC124144.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099P06, complete sequence.
GenBankAP0149611e-98AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-98CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638954.11e-139protein REVEILLE 8
TrEMBLA0A0E0KYU80.0A0A0E0KYU8_ORYPU; Uncharacterized protein
STRINGOPUNC05G04000.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.23e-27MYB_related family protein