PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC05G01690.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 143aa MW: 15564 Da PI: 4.2773 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 44.8 | 2.6e-14 | 12 | 50 | 22 | 59 |
EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++YY+C+s gCp++k+v+++++d ++++itY+++Hnh+ OPUNC05G01690.2 12 QGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 50 58****9877****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 4.8E-7 | 6 | 51 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-11 | 10 | 50 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.204 | 12 | 52 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-11 | 12 | 50 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.6E-15 | 12 | 51 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 143 aa Download sequence Send to blast |
MGRNQSKDLL IQGYYKCSSY RGCPARKQVD KCRNDASLLI ITYTSDHNHD NYAATATITT 60 TTTTTNSVQQ QAHNPDRSDA GDALSNGMSL AEVVTVASSE LSSEEESCDI FDELEELPVS 120 ASPLPSLSFM VQESSFSDAR TLL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC130598 | 9e-88 | AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence. | |||
GenBank | AK241799 | 9e-88 | AK241799.1 Oryza sativa Japonica Group cDNA, clone: J065208G18, full insert sequence. | |||
GenBank | AK288062 | 9e-88 | AK288062.1 Oryza sativa Japonica Group cDNA, clone: J075154N16, full insert sequence. | |||
GenBank | AP014961 | 9e-88 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 9e-88 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639937.1 | 3e-74 | probable WRKY transcription factor 69 | ||||
TrEMBL | A0A0E0KY04 | 1e-101 | A0A0E0KY04_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G01690.1 | 1e-92 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G29280.1 | 2e-15 | WRKY DNA-binding protein 65 |