PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G01610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 109aa MW: 11523.4 Da PI: 9.0887 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 68.2 | 1.9e-21 | 59 | 107 | 1 | 49 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49 +CaaCk+lrr+C++ Cvlapyfp ++p+kf +h++FGasn++kll+a OPUNC05G01610.1 59 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHRVFGASNIIKLLQAS 107 7*********************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.389 | 58 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-20 | 59 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MATNPLNSPN PASISYKLSL ELIKMGSSSD TACTVATAPP SPTPTSPPLA GQTTVVLSPC 60 AACKILRRRC VDRCVLAPYF PPTEPHKFTT AHRVFGASNI IKLLQASND |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-18 | 58 | 104 | 10 | 56 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-18 | 58 | 104 | 10 | 56 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 1e-111 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638880.1 | 4e-36 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 1e-28 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A0E0KXZ2 | 2e-72 | A0A0E0KXZ2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G01610.1 | 3e-73 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 4e-30 | LOB domain-containing protein 11 |