PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G01480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 499aa MW: 54352.9 Da PI: 7.1664 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.3e-17 | 168 | 217 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OPUNC05G01480.1 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 217 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.1 | 4.4e-13 | 260 | 310 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g OPUNC05G01480.1 260 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 310 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-9 | 168 | 217 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-16 | 168 | 226 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.43E-11 | 169 | 227 | No hit | No description |
PROSITE profile | PS51032 | 17.596 | 169 | 225 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-17 | 169 | 226 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-32 | 169 | 231 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-8 | 260 | 310 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.82E-24 | 260 | 320 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-17 | 260 | 319 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-15 | 261 | 318 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-32 | 261 | 324 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.527 | 261 | 318 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 262 | 273 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 300 | 320 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MELDLNNVAE GVPEKQETAE RSDSGTSESS VLNAEASGAP AAAPAEEGSS STPPPPPAVL 60 EFSILRSSAS ASGENDADDD EEEATPSPPP LHHHHQLVTR ELFPSAAPSP RPAPQHWAEL 120 GFLRPDPTRP HPDIRVLAHA PPPAPPPPPQ PQPQAAKKSR RGPRSRSSQY RGVTFYRRTG 180 RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFNLSDYE EDMKQMKSLS 240 KEEFVHVLRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEVEAARA 300 YDKAAIKCNG REAVTNFEPS TYDGELPTDA AAQGADVDLN LSISQPAASQ QSPKRDSTLG 360 LQIHHGSFEA PSELASRPHR FPLLTEHPPI WTAQPHPLFP NNEDASRSSD HQKRKPSEGV 420 AVPSWAWKQV SHHHPAPPHT LPLPFFSSSS PPSSSAAASS GFSKAATTAA AQHSATLRFD 480 PTAPSSSSSS RHHHPHHHH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY685117 | 0.0 | AY685117.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D23-like (AP2D23) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639329.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Swissprot | B8AXC3 | 0.0 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A0E0KXX5 | 0.0 | A0A0E0KXX5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G01480.2 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-94 | related to AP2.7 |