PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G00160.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 397aa    MW: 42866 Da    PI: 7.3652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G00160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-09186233455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + + Y++sLq
  OPUNC05G00160.1 186 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 233
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.51E-11180237No hitNo description
SuperFamilySSF474592.09E-17180252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17182254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.675182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-6186233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MESLCGQHEQ QLHQSSSSSL LPYCYLSAPE PLPVPGFPAG CSNLEEKAAA ALAAYEYESS  60
SCSSLDPTSM PMVYSPIVLQ PQESLLSFDF DNAAAAAGDN KWVPGIQGSC TCSLGSTQDM  120
DASWGKSRKH KRSNVGLKGL EEKKARRVVL HQHGDDVKKK AKEAAGGEPP AGYIHVRARR  180
GQATDSHSLA ERVRREKISE RMKMLQSLVP GCDKVTGKAL MLDEIISYVQ SLQNQVEFLS  240
MKLASLSPMI YEFGPGIDMY PDVLPQLAKM PHEMVQCMGQ MGSTGISLQG LGGGPTGFAQ  300
DGSSHMNMVV MQVGEQGQQQ GPLHQVEMSS LCFFQNGHQA VSHRGGDDES TSGVSKLNKK  360
KNLYHLLLGS KTHTIAISAF TITKKPLILA LMSLINA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658640.0AK065864.1 Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence.
GenBankHQ8588530.0HQ858853.1 Oryza sativa Japonica Group isolate UT1616 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640733.10.0transcription factor bHLH63 isoform X1
RefseqXP_015640734.10.0transcription factor bHLH63 isoform X1
RefseqXP_015640735.10.0transcription factor bHLH63 isoform X1
TrEMBLA0A0E0KXG10.0A0A0E0KXG1_ORYPU; Uncharacterized protein
STRINGOPUNC05G00160.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP167931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-48bHLH family protein