PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G28220.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 277aa    MW: 31332.4 Da    PI: 6.7824
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G28220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.54.7e-48101382128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkev 92 
                      +pGfrF+Pt+eelv +yL++kv +++ +   +i+evd+y+v+PwdL+ ++++++++ +yfFs +d+ky+  tg+r+nrat++g+Wkatg+dk+v
  OPUNC04G28220.1  10 APGFRFQPTEEELVGYYLARKVVQQQEDG--IIQEVDLYTVQPWDLQaRCCRQQQEYCYFFSYKDRKYPsgTGTRTNRATAAGFWKATGRDKPV 101
                      79*********************999555..8**************955777777788**********966689******************** PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ls+     +g++ktLvfy+grap+g+ktdW++heyrl
  OPUNC04G28220.1 102 LSSsPAVIIGMRKTLVFYRGRAPNGTKTDWIIHEYRL 138
                      *98455669**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-508158IPR003441NAC domain
PROSITE profilePS5100552.7979158IPR003441NAC domain
PfamPF023655.2E-2511138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEESYCVAVA PGFRFQPTEE ELVGYYLARK VVQQQEDGII QEVDLYTVQP WDLQARCCRQ  60
QQEYCYFFSY KDRKYPSGTG TRTNRATAAG FWKATGRDKP VLSSSPAVII GMRKTLVFYR  120
GRAPNGTKTD WIIHEYRLVA DHHQQQEGGW VVCRAFQKPT TLQHQLHLQR PPPGYYDDQY  180
LLYPTPPPAA AGGFLCSPLE FGLEDESKTM MILSNNNIPR LRLVSPTAVH GNINDVTTAP  240
PPPHRLPELL ATPIDGNFLD TLLHDHDFFT AASTPTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-391116317173Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066561e-125AL606656.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence.
GenBankAP0149601e-125AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635310.11e-100NAC domain-containing protein 105
SwissprotQ9FH596e-67NC105_ARATH; NAC domain-containing protein 105
TrEMBLA0A0E0KX790.0A0A0E0KX79_ORYPU; Uncharacterized protein
STRINGOPUNC04G28220.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1902799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66300.15e-59NAC domain containing protein 105
Publications ? help Back to Top
  1. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]