PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G27120.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 433aa    MW: 47789.4 Da    PI: 7.5155
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G27120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.61.3e-19299394395
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+lt+sdv++ gr+v+pk+ ae+h   ++++e++tl++ d +   +W++k+++  ++ks++yvl+  + +Fvk +gL++gD+++++ + +++++
  OPUNC04G27120.1 299 KELTNSDVGNIGRIVMPKRDAEAHlpALQQREGVTLKMDDfKFETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLQTGDIFIIYKS-SESGK 390
                      89************************99999*********7778*******9989999999**99.9*******************43.37777 PP

                      .EEE CS
               B3  92 lvvk 95 
                      +vv+
  OPUNC04G27120.1 391 FVVR 394
                      7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-25296395IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-23296394No hitNo description
SuperFamilySSF1019364.97E-19296392IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-9297397IPR003340B3 DNA binding domain
PROSITE profilePS508639.573297399IPR003340B3 DNA binding domain
PfamPF023621.3E-15299394IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MADARGSSSS GSGGGGGGEG GGEAGNGDFV GSGQQNRYHG ILGAVPPPTV GCQNIAHHQY  60
PASLIHHQSP TMPLPMAPLP YVPQYTMLPT PAVLPSHHHH GQSQISQENF QDWVPSNNVA  120
APHVPSTYQD WRQMCNGSAF MPFGQTAANS NVFYQNLTFN SWTSNNMPRN PVYTSYHPAA  180
IEDHHAPLFH SNNHDIDPGF QTNFRMDQAF VPASSPFPPV SSSSHSFSSA KISNGPTYTK  240
KAKKSNVKDP PVVLRSDMET EKNDEPDQTP VSEPPSMNQN AENLIIRFNC REYRVILRKE  300
LTNSDVGNIG RIVMPKRDAE AHLPALQQRE GVTLKMDDFK FETTWNFKYR FWPNNKSRMY  360
VLESTGGFVK HHGLQTGDIF IIYKSSESGK FVVRGEKAIK PNAIMPVVDC SCKNEINNSE  420
ECGFAISLQT KKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-352943982106B3 domain-containing transcription factor FUS3
6j9b_D3e-352943982106B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728740.0AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880492.10.0putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC40.0Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA0A0E0KWS90.0A0A0E0KWS9_ORYPU; Uncharacterized protein
STRINGOPUNC04G27120.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-38B3 family protein