PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G27110.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 426aa MW: 47978.8 Da PI: 8.4047

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G27110.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60	4e-19	292	386	3	94
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 k+lt+sdv++ gr+v+pk+ ae+h + ++e+++l++ d + +W++k+++ ++ks++yvl+ + +Fvk++gL++gD+++++ ++ ++++ OPUNC04G27110.2 292 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVKLKMDDfKLETTWNFKYRFwpNNKSRMYVLE-STGGFVKQHGLQTGDIFIIYKSS-ESEK 383 89**********************888999****7778***998999999999.9*******************544.5554 PP .EE CS B3 92 lvv 94 +vv OPUNC04G27110.2 384 FVV 386 454 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.06E-18	289	386	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.6E-25	289	389	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.52E-23	289	387	No hit	No description
PROSITE profile	PS50863	9.15	290	392	IPR003340	B3 DNA binding domain
SMART	SM01019	5.5E-10	290	390	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-15	292	386	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MAGARGSPSF GGGGSRDIEG HDDFVGGGQH NRYHRILEAM SSPLVRRENV VHHQYPTGLI 60 HHPSSTMPVA PCSYVPRYTM LPLQHHHRQL QISQENFQDR VPSNNVAAPH VPSNFQDLRP 120 MCNGPPFMSF GHTASNRNVL YQNLTPYSFN AWTSNNMPRN PVYTSYHPTA IEDHHATPFH 180 INNHDTDQGF FTVSTSFRVD QSFVRAPSPF PPVSSSSRCF SSAQISNGPT HAKQAKKSDI 240 KDPPIILRSD TGSEKNDELD QTPASEPPSM NHNSENLTIR FNCREYRVIL RKELTNSDVG 300 NIGRIVMPKR DAEAHLPALH QREGVKLKMD DFKLETTWNF KYRFWPNNKS RMYVLESTGG 360 FVKQHGLQTG DIFIIYKSSE SEKFVVCGEK AIKPNAVMPI VDCSCKNELN NSEECGFTIS 420 LQTKKT

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MAGARGSPSF GGGGSRDIEG HDDFVGGGQH NRYHRILEAM SSPLVRRENV VHHQYPTGLI  60
HHPSSTMPVA PCSYVPRYTM LPLQHHHRQL QISQENFQDR VPSNNVAAPH VPSNFQDLRP  120
MCNGPPFMSF GHTASNRNVL YQNLTPYSFN AWTSNNMPRN PVYTSYHPTA IEDHHATPFH  180
INNHDTDQGF FTVSTSFRVD QSFVRAPSPF PPVSSSSRCF SSAQISNGPT HAKQAKKSDI  240
KDPPIILRSD TGSEKNDELD QTPASEPPSM NHNSENLTIR FNCREYRVIL RKELTNSDVG  300
NIGRIVMPKR DAEAHLPALH QREGVKLKMD DFKLETTWNF KYRFWPNNKS RMYVLESTGG  360
FVKQHGLQTG DIFIIYKSSE SEKFVVCGEK AIKPNAVMPI VDCSCKNELN NSEECGFTIS  420
LQTKKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9c_A	8e-35	281	393	4	117	B3 domain-containing transcription factor LEC2
6j9c_D	8e-35	281	393	4	117	B3 domain-containing transcription factor LEC2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription regulator that binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269\|PubMed:18025467}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072874	0.0	AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635183.1	0.0	B3 domain-containing protein Os04g0676600
Swissprot	Q7XKC5	0.0	IDEFH_ORYSJ; B3 domain-containing protein Os04g0676600
TrEMBL	A0A0E0KWS6	0.0	A0A0E0KWS6_ORYPU; Uncharacterized protein
STRING	OPUNC04G27110.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	2e-36	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]