PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G27110.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 525aa    MW: 59464.9 Da    PI: 9.3268
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G27110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.7e-19391485394
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+lt+sdv++ gr+v+pk+ ae+h   + ++e+++l++ d +   +W++k+++  ++ks++yvl+  + +Fvk++gL++gD+++++ ++ ++++
  OPUNC04G27110.1 391 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVKLKMDDfKLETTWNFKYRFwpNNKSRMYVLE-STGGFVKQHGLQTGDIFIIYKSS-ESEK 482
                      89************************888999********7778*******9989999999**99.9*******************544.5554 PP

                      .EE CS
               B3  92 lvv 94 
                      +vv
  OPUNC04G27110.1 483 FVV 485
                      454 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-18388485IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-25388488IPR015300DNA-binding pseudobarrel domain
CDDcd100179.59E-23388486No hitNo description
SMARTSM010195.5E-10389489IPR003340B3 DNA binding domain
PROSITE profilePS508639.15389491IPR003340B3 DNA binding domain
PfamPF023623.2E-15391485IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MKRSDAPAFP TPSFPIPHSP TRQWRLQVKR SPQAAIRSAD SDAEASRRTP RRPRRPAITI  60
FRKPEFDWYC CAKINRKESD IREQVSEEKV VTFCASCTRM AGARGSPSFG GGGSRDIEGH  120
DDFVGGGQHN RYHRILEAMS SPLVRRENVV HHQYPTGLIH HPSSTMPVAP CSYVPRYTML  180
PLQHHHRQLQ ISQENFQDRV PSNNVAAPHV PSNFQDLRPM CNGPPFMSFG HTASNRNVLY  240
QNLTPYSFNA WTSNNMPRNP VYTSYHPTAI EDHHATPFHI NNHDTDQGFF TVSTSFRVDQ  300
SFVRAPSPFP PVSSSSRCFS SAQISNGPTH AKQAKKSDIK DPPIILRSDT GSEKNDELDQ  360
TPASEPPSMN HNSENLTIRF NCREYRVILR KELTNSDVGN IGRIVMPKRD AEAHLPALHQ  420
REGVKLKMDD FKLETTWNFK YRFWPNNKSR MYVLESTGGF VKQHGLQTGD IFIIYKSSES  480
EKFVVCGEKA IKPNAVMPIV DCSCKNELNN SEECGFTISL QTKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A2e-343804924117B3 domain-containing transcription factor LEC2
6j9c_D2e-343804924117B3 domain-containing transcription factor LEC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription regulator that binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728740.0AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635183.10.0B3 domain-containing protein Os04g0676600
SwissprotQ7XKC50.0IDEFH_ORYSJ; B3 domain-containing protein Os04g0676600
TrEMBLA0A0E0KWS60.0A0A0E0KWS6_ORYPU; Uncharacterized protein
STRINGOPUNC04G27110.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.18e-36B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]