PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G26630.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 388aa    MW: 41133.9 Da    PI: 8.9775
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G26630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.94.8e-1759145271
         trihelix   2 WtkqevlaLiearremeerlr.rgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                      Wt +e+l Li+a+r +++r    g+                +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e++ 
  OPUNC04G26630.1  59 WTLHETLILITAKRLDDDRRAgVGAggggaggaagspptprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRV 145
                      *************9555555423324456666777777777*****************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.56251132IPR017877Myb-like domain
PfamPF138379.5E-1158143No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSGSSADPSP SASTAGAASP LALLRAHGHL TTPPSPATGP APPPPSPASA PRDYRKGNWT  60
LHETLILITA KRLDDDRRAG VGAGGGGAGG AAGSPPTPRS AEQRWKWVEN YCWKNGCLRS  120
QNQCNDKWDN LLRDYKKVRD YESRVAATAA VAGGAGAGAG GGGSAAANST LPSYWTMERH  180
ERKDCNLPTN LAPEVYDALS EVLSRRAARR GGATIAATPP PPLALPPPPP PPTSPPKPLV  240
AQHHHHHHHH PLPPQPPPSL QLPPAVVAPP PASVSAEEEM SGSSESGEEE EEGSGGEPEA  300
KRRRLNRLGS SVVRSATVVA RTLVACEEKR ERRHREMLQL EERRLRLEEE RTEVRRQGFA  360
GLITAVNSLS SAIHALVSDH RSGDSSGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300304KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8278340.0HQ827834.1 Oryza punctata isolate BB Shattering4 gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448740.21e-109trihelix transcription factor ASR3
TrEMBLA0A0E0KWL50.0A0A0E0KWL5_ORYPU; Uncharacterized protein
STRINGOPUNC04G26630.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-39Trihelix family protein