PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G25250.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 491aa    MW: 53218.7 Da    PI: 6.2307
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G25250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.9e-12140196155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OPUNC04G25250.1 140 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 196
                      57*******************5444.2455536655.779999**************98 PP
2AP252.21.5e-16239290155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  OPUNC04G25250.1 239 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 290
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-18140206No hitNo description
PfamPF008473.4E-9140196IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15140205IPR016177DNA-binding domain
SMARTSM003801.2E-21141210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-12141205IPR001471AP2/ERF domain
PROSITE profilePS5103217.57141204IPR001471AP2/ERF domain
PRINTSPR003677.8E-6142153IPR001471AP2/ERF domain
CDDcd000183.30E-24239299No hitNo description
SuperFamilySSF541711.05E-17239299IPR016177DNA-binding domain
PfamPF008473.2E-11239290IPR001471AP2/ERF domain
SMARTSM003803.0E-32240304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17240298IPR001471AP2/ERF domain
PROSITE profilePS5103219.137240298IPR001471AP2/ERF domain
PRINTSPR003677.8E-6280300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDMDTSHHYP WLNFSLAHHC DMEEEERGAA AELAAVAGAA PKLEDFLGSG CNGGSGGACP  60
ISGPVQSTPT AAELYESELK FLAAGFQLSG AAAAATVPAP LSAAREQTDE TKQLVLPPQA  120
AVAPAPEQKK VVDSFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQGGYDKE  180
EKAARAYDLA ALKYWGPSTT TNFPVAEYER ELEEMKHMTR QEFVASLRRK SSGFSRGASI  240
YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FGTEEEAAEA YDIAAIKFRG LNAVTNFEIG  300
RYNVESIISS NLPIGSMAGN RSTKAGLELA PSSSADAIAS AEANHTVVAP PSTLAFTALP  360
MKYDQADYLS YLALQHHQQG NLQGLGFGLY SSGVNLDFAN ANGNGNGAMS HCYTNVSLHE  420
QQQQHQHQHQ QEQQQDQQDD QSQSSNNSCG SIPFATPIAF SGSYESSMAA AVSFGYYPNV  480
AAFQTPIFGM E
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0621790.0AY062179.1 Oryza sativa aintegumenta-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633701.10.0AP2-like ethylene-responsive transcription factor AIL5 isoform X2
SwissprotQ6PQQ31e-133AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0E0KW360.0A0A0E0KW36_ORYPU; Uncharacterized protein
STRINGOPUNC04G25250.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-116AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]