PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G21710.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 275aa    MW: 31980.6 Da    PI: 6.801
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G21710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.55.7e-2620103186
         trihelix   1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W  qe+++Li+ar eme++  +  g+++k+lWe+vs+++rerg++r+++qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  OPUNC04G21710.1  20 QWGAQETRELIAARGEMEREAAAaaGRSAKTLWEAVSARLRERGYRRTSEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 103
                      7*****************999963478**************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00771781IPR001005SANT/Myb domain
CDDcd122032.37E-181986No hitNo description
PfamPF138372.7E-2220104No hitNo description
PROSITE profilePS500907.4452179IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEAGCGEGGG GGGRDERVPQ WGAQETRELI AARGEMEREA AAAAGRSAKT LWEAVSARLR  60
ERGYRRTSEQ CKCKWKNLVN RYKGKETSDP ENGRQCPFFD ELHAVFTERA RTMQQQLLES  120
ESGPSVKKKL KRPSGDLSSE EDSDDEEDGG GDSGDEKPIR SRKRKTADKR QQSQRMAEKS  180
RTGISSLHEL LHDFLAQQQR MDIQWHEMME RRSQERLVFE QEWRHSMQKL EQERLMLEHT  240
WMEREEQRRM REEARAEKRD ALLTTLLNKL SQEDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165SRKRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1057200.0AK105720.1 Oryza sativa Japonica Group cDNA clone:001-201-F11, full insert sequence.
GenBankAL6066380.0AL606638.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552280.0CR855228.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0403H10-OSIGBa0105A11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163375.11e-135trihelix transcription factor GT-3a-like
TrEMBLA0A0E0KUS10.0A0A0E0KUS1_ORYPU; Uncharacterized protein
STRINGOPUNC04G21710.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.13e-28Trihelix family protein