PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G21350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 490aa MW: 51037.1 Da PI: 5.2007 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 8.2e-31 | 243 | 301 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ OPUNC04G21350.1 243 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 301 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 33.109 | 237 | 303 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-26 | 240 | 303 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-30 | 240 | 303 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 242 | 302 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 244 | 301 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MCDYFLQRME GDQAGGDLTD IVRAGGGAMP GSVVVDLPST AAEWQLPAEP MLFPPPPSLS 60 STDGCAGGAA GADIFGGGGD LFSGLVDPFS SDYSSGADFL DAMPDAMAKV GFDTAVGAGC 120 GAGGGGGGGG RGGQLLDMSR KPLLPRGMPM PAVGGLAPRV MPSPLSPRAI RPYPPISAGD 180 MMKLGITAGQ AAGCAIDAAV AGMQMSSPRS GGIKRRKNQA RKVVCIPAPT AAGGRPSGEV 240 VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCSARKQV ERSRTDPNML VITYTSEHNH 300 PWPTQRNALA GSTRSHHSKN SGGGSGSKGS QNEKSQQQPS VKEEQKDQAT TATTTTSTIT 360 TTNSASPVVV KEEEALAGSS SEALELERVM DTAAGVVDHS ELMDHVFSES YKPMIPETGQ 420 PDDFFADLAE LESDPMSLIF SKEYMEAKPS GGDHAQEKAI AKELDPFDML DWSTTTNSSA 480 GSSFEQGKRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-25 | 217 | 304 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-25 | 217 | 304 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00171 | DAP | Transfer from AT1G30650 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110912 | 0.0 | AK110912.1 Oryza sativa Japonica Group cDNA clone:002-173-C03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652742.1 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
TrEMBL | A0A0E0KUM9 | 0.0 | A0A0E0KUM9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G21350.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2592 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 3e-65 | WRKY DNA-binding protein 35 |