PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G20010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 363aa MW: 39581.9 Da PI: 8.8314 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.6e-08 | 125 | 146 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ff+ G C+yGd+C++ H OPUNC04G20010.1 125 EKPCKFFLS-GDCRYGDQCRYLH 146 689**7777.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.1 | 68 | 93 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.193 | 68 | 94 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.788 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 122 | 148 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.15E-6 | 124 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-6 | 125 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-6 | 126 | 146 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF50978 | 8.85E-16 | 175 | 325 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 3.4E-13 | 175 | 326 | IPR015943 | WD40/YVTN repeat-like-containing domain |
PROSITE profile | PS50294 | 9.678 | 208 | 261 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 0.0055 | 215 | 252 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 8.804 | 222 | 251 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MYENCSKIEK KNPNNPTIPT RHEPHAVVSY RRRRIARNQP ILLASTHVLR VRRGRPAGRH 60 GPTSPASSSA GKVCIHWRAG RCIRFPCHYL HSELPEAPPK RPSHRPSAAA GGGGGGNCVV 120 SSTREKPCKF FLSGDCRYGD QCRYLHAGAP STTASRCSPR SAAIRRSHQY RAGGRIWDTQ 180 TGAEMSLSEP TGRVHALAVG NGMLFAAIQV WDLATLQWTQ TLSGHTGAIM SLLCWDQFLL 240 SSSLDQTIKV WATMETGSPG ALALACMQDA QLNPILLCST NDNIVHLYEL PSFANRDKIS 300 FEAEVGAVKN GPGGLIFTGD EIGELKCGNG QLNELMESQT VEEYTSTGLE ELFADVGTWK 360 KKN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 33 | RHEPHAVVSYRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103254 | 1e-112 | AK103254.1 Oryza sativa Japonica Group cDNA clone:J033123O13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627227.1 | 3e-75 | zinc finger CCCH domain-containing protein 17 | ||||
Swissprot | Q0DYP5 | 3e-76 | C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | A0A0E0KU60 | 0.0 | A0A0E0KU60_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G20010.2 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 3e-58 | zinc finger WD40 repeat protein 1 |
Publications ? help Back to Top | |||
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