PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G19000.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 624aa    MW: 68824.7 Da    PI: 8.2237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G19000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.62.7e-28221562128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 
                      p GfrF+P+d+elv +yL ++++ +++  ++ i e+++y+++P +L +++++  +++ wyf s+r++ky+ g+++ r t+  +g+Wka+   ke
  OPUNC04G19000.1  22 PFGFRFEPKDKELVEYYLLPRLQCRPTAPNHWIIETNVYEFHPDKLINELYNdrGDDTWYFLSPRARKYQGGDKPLRGTEddQGRWKASTGRKE 115
                      88************************888778**************85443323677********************777679****7666666 PP

              NAM  92 vlsk..kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                        ++  +g+ + +k++L++++g  + +  ++t+W+mhe+++
  OPUNC04G19000.1 116 AEEAidGGRIKFCKNSLAYHEGpvNVKGEKQTKWLMHEFTI 156
                      6555569999**********98734444568********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-3218186IPR003441NAC domain
PROSITE profilePS5100536.68321186IPR003441NAC domain
PfamPF023655.6E-1722155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAEEEKKSAG GRGDKKEEEE IPFGFRFEPK DKELVEYYLL PRLQCRPTAP NHWIIETNVY  60
EFHPDKLINE LYNDRGDDTW YFLSPRARKY QGGDKPLRGT EDDQGRWKAS TGRKEAEEAI  120
DGGRIKFCKN SLAYHEGPVN VKGEKQTKWL MHEFTIPAYE NKVNKSNTAN SNKTLDKFVM  180
CKIYVSSRDR SGDEENAEAI TSNAAFDEEH SSSQPGHQAS AGIASSDGEF SSPQPGPAVR  240
TSEETSGAQQ TGNKRPAEEH AAVAQRPPQQ RKLTTGAAPA PPPASSYIGG ATAIHDNRTG  300
HPMARPAGHA TLPPPRQHAT FNGPLRMPTG QVVYNDQLMM RRQMATAAYK RQMFLQQMAA  360
RNGQQAPVQG VVVANNGQAA SSGPQVTSNW QMSPIQRQRA AMAAAYNNHQ YHQMLLQQQH  420
AAMAYNLQAQ QLQGREVAHD GQTTSARHNC QMMPVQGPKV EQNGETTSSA QRAPAACNCP  480
APVQRPQALP FNNVPPMPLR PRPAAPTHSG NSFDQTLVMR RLPSPSVQPP PQLRPAPETP  540
EMHAKRVLGQ LVKELFRQRR IDQAQAAQER LMPPQQPCSD AVRCNDSGEK RPAEVETTEV  600
APDGSASAEG NDLQRDSPVA PQTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-14141848166Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066471e-139AL606647.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence.
GenBankAP0149601e-139AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-139CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551981e-139CR855198.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0137D06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0KTR60.0A0A0E0KTR6_ORYPU; Uncharacterized protein
STRINGOPUNC04G19000.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1756522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.14e-21NAC family protein