PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G17670.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 282aa MW: 30088.1 Da PI: 7.94

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G17670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	180.5	9.8e-56	23	207	6	163
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......................lleelk 76 eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+ aa+ + + + ++e+ OPUNC04G17670.1 23 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASAANQLPFGQAllsptsphglldevpsfqappslMTEQAS 116 579*****************************************998555444444444444455667899****9999986444444 PP YABBY 77 veeenlksnvekees..asts..vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 + ++++s +++ + + ts +++k+++ e ++ +++p ++r ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaakn++h OPUNC04G17670.1 117 PNVSSITSSNSSCANnaPATSmaSAANKVTQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNYTHC 207 444444443332222002222002223335555555556677*********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.4E-62	23	207	IPR006780	YABBY protein
SuperFamily	SSF47095	1.17E-5	155	204	IPR009071	High mobility group box domain
CDD	cd00084	7.34E-4	168	195	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MSSAPETFSL DHLAQHQPPP LAEQEQLCYV HCNFCDTILA VGVPCSSLFK TVTVRCGHCA 60 NLLSVNLRGL LLPAAASAAN QLPFGQALLS PTSPHGLLDE VPSFQAPPSL MTEQASPNVS 120 SITSSNSSCA NNAPATSMAS AANKVTQREP QQPKNAPSAN RTSEKRQRVP SAYNRFIKDE 180 IQRIKASNPD ITHREAFSAA AKNYTHCINQ IRIYSVSSLC MHQWAHFPHI HFGLMPDQGL 240 KKTGIQSQDG AGECMLFKDG LYAAAAAAAA ATAASSMGVT PF

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274017	0.0	AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds.
GenBank	AK070205	0.0	AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634596.1	1e-163	protein YABBY 5
Swissprot	Q01JG2	1e-164	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	1e-164	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A0E0KT97	0.0	A0A0E0KT97_ORYPU; Uncharacterized protein
STRING	OPUNC04G17670.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	5e-52	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]