PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G17180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 460aa MW: 49406.9 Da PI: 8.9551 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.7e-19 | 209 | 259 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge OPUNC04G17180.1 209 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 259 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.02E-32 | 208 | 267 | No hit | No description |
SMART | SM00380 | 2.5E-38 | 209 | 272 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-32 | 209 | 267 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-23 | 209 | 268 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.998 | 209 | 266 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-11 | 210 | 221 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-12 | 210 | 259 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-11 | 232 | 248 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MDAPSGESGG GGGGRRWKGK GVTPIQPRRQ LGTVLEDSSA ALLRPLKKIG RSPDRLLRSA 60 SSLSTSSSAP PSPRSSSASD APVRVISSSP PSPSPPSARH IFPFAYEAST TTVGGSPRLH 120 PLWQQSSMSQ PASPQQQQRP LQHQQMISFG ASPPCSTTQF VVPENAQQQQ MLLRYWSEAL 180 NLSPRGGPGG VPPWLYQQLL RAPPPPQKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD 240 TAEDAAMAYD REAFKLRGEN ARLNFPDRFL GKGRAGGSGR TCVSSSAAAA ASCSSSSPSP 300 PETPDEANTQ QQAPQQREQR DTAGVSMEKK QPQPPAPNSR QEGCSGGDAA APYPAEMLHA 360 PASSGSMWVA PDESWFSTWG PGSSFWDDYD MDSARSLFLH PRFTGDETSM DHSGTQATVP 420 AAAATAAGIS MPCDDVPVTS SSDLPPQGTP HTPTFMWKED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-20 | 208 | 268 | 4 | 65 | ATERF1 |
3gcc_A | 5e-20 | 208 | 268 | 4 | 65 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662976 | 0.0 | AL662976.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855230 | 0.0 | CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634091.1 | 0.0 | ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | A0A0E0KT34 | 0.0 | A0A0E0KT34_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G17180.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3691 | 32 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 2e-35 | ERF family protein |