PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G13590.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 638aa    MW: 65684.4 Da    PI: 8.0032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G13590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044353375123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k+Fs++  L  H   H
  OPUNC04G13590.1 353 YECSECHKTFSSHQALGGHVAAH 375
                      99***********9998887666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.7416188IPR007087Zinc finger, C2H2
SMARTSM003550.0336183IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.83E-86283No hitNo description
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
PfamPF139120.00216383IPR007087Zinc finger, C2H2
SuperFamilySSF576675.83E-8348375No hitNo description
PfamPF139121.2E-7353377IPR007087Zinc finger, C2H2
SMARTSM003550.017353375IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.863353380IPR007087Zinc finger, C2H2
PROSITE patternPS000280355375IPR007087Zinc finger, C2H2
PfamPF139121.5E-4452474IPR007087Zinc finger, C2H2
SMARTSM003550.38452474IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280454474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MDSRGQSYYL KAAAAAAAAG GDATDHDEEP AELAPKAVPS KKRLVVEAQG AGGAAAMRDD  60
LTCPECGKVF LSDKAMYGHL RAHPLRKHKG VARPAAATTA ADDAFVAAGV KARPWKVPRK  120
EEVELDDRHP GRSPVTGKRG RPASSASSSG SAPAPPASSR LQLVLTEEEE AAMTLLDIAS  180
GRSLDHQPTQ PAHVADGAAL PAPASHQMPS DVVEQDANAV AAPGVQQHWV PDHVVAGADE  240
GQRRWEAEKP ALVEHVFGIV REHVVAVTAD AEPQTPEANT PVKLGPVTDQ AAPVLGDKNG  300
NADMPVSPGG TTKKPLKRRI QDVERSPTAP PPPVDFKPPL VRRIPSPASK RKYECSECHK  360
TFSSHQALGG HVAAHKRQKK SCVEQQQHEA LEAAAQVSRH NFLANQRPVG VGVVVDAPVV  420
AAGGCCLGPL GEEGLVGPPP PPTAPAPAPP QHQCVRCPMI FPTGQALGGH MRKHFLEAKE  480
QEQALASASA NANANAHANA NATPAPPPMM ANTAPAPPPM MANAAPVPPT MANGAAPVPP  540
PIAVATPPAP PIARAAPPPP MANGAKPATP VGTAAAAPPA GNAAPAGPQP GVNLVGAREP  600
NQTISIPLKM EVKLAPGWDP SARYTGNQHA PAANCRAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064411e-176AL606441.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence.
GenBankAP0149601e-176AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-176CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880741.11e-151zinc finger protein 628-like
TrEMBLA0A0E0KRR80.0A0A0E0KRR8_ORYPU; Uncharacterized protein
STRINGOPUNC04G13590.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1819399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-06C2H2-like zinc finger protein