PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G12870.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 37339.2 Da PI: 7.6437 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.7 | 3.1e-55 | 11 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL+kkv+++++ + +++e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdk++++ OPUNC04G12870.2 11 LPPGFRFHPTDEELITHYLAKKVADDRFAA-LAVAEADLNKCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGKDKDIFR 103 79*************************999.67***************8888899*************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkgek+ Wvmheyrl OPUNC04G12870.2 104 -GKALVGMKKTLVFYTGRAPKGEKSGWVMHEYRL 136 .99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-63 | 7 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.252 | 11 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-30 | 12 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MEQQGQAGMD LPPGFRFHPT DEELITHYLA KKVADDRFAA LAVAEADLNK CEPWDLPSLA 60 KMGEKEWYFF CLKDRKYPTG LRTNRATESG YWKATGKDKD IFRGKALVGM KKTLVFYTGR 120 APKGEKSGWV MHEYRLHGKL HAAALGLLPG KPASSKVRTH ARHNEWVLCR VFKKSLVEVG 180 AAGGRKAAVV EMARGGSTSS SVADEITMSS VLPPLMDMSG AGAGAIDPAT TAHVTCFSNA 240 LEGQFFNPTA VHGHGGGDSS SPFMASFTQY GQLHHGVSLV QLLESCNGYN SLVDLAVAGS 300 QLQPAACGGE RERLSASQDT GLTSDVNPEI SSSSGQKFDH EAALWGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-53 | 2 | 175 | 6 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028181 | 0.0 | AB028181.1 Oryza sativa mRNA for OsNAC2 protein, complete cds. | |||
GenBank | AK061745 | 0.0 | AK061745.1 Oryza sativa Japonica Group cDNA clone:001-038-F10, full insert sequence. | |||
GenBank | AK071020 | 0.0 | AK071020.1 Oryza sativa Japonica Group cDNA clone:J023080H09, full insert sequence. | |||
GenBank | AK104626 | 0.0 | AK104626.1 Oryza sativa Japonica Group cDNA clone:006-310-B03, full insert sequence. | |||
GenBank | AL606460 | 0.0 | AL606460.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855203 | 0.0 | CR855203.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0219H12, complete sequence. | |||
GenBank | CT828636 | 0.0 | CT828636.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012A02, full insert sequence. | |||
GenBank | CT830107 | 0.0 | CT830107.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA218A09, full insert sequence. | |||
GenBank | DQ520641 | 0.0 | DQ520641.1 Oryza sativa (japonica cultivar-group) NAC domain protein (TIL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633922.1 | 0.0 | NAC domain-containing protein 92 | ||||
Refseq | XP_015633924.1 | 0.0 | NAC domain-containing protein 92 | ||||
Swissprot | Q9FLJ2 | 2e-96 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0E0KRH2 | 0.0 | A0A0E0KRH2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G12870.2 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 5e-88 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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