PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G12870.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 347aa MW: 37339.2 Da PI: 7.6437

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G12870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.7	3.1e-55	11	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL+kkv+++++ + +++e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdk++++ OPUNC04G12870.1 11 LPPGFRFHPTDEELITHYLAKKVADDRFAA-LAVAEADLNKCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGKDKDIFR 103 79***********************999.67***********8888899*********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkgek+ Wvmheyrl OPUNC04G12870.1 104 -GKALVGMKKTLVFYTGRAPKGEKSGWVMHEYRL 136 .99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-63	7	174	IPR003441	NAC domain
PROSITE profile	PS51005	58.252	11	174	IPR003441	NAC domain
Pfam	PF02365	7.7E-30	12	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MEQQGQAGMD LPPGFRFHPT DEELITHYLA KKVADDRFAA LAVAEADLNK CEPWDLPSLA 60 KMGEKEWYFF CLKDRKYPTG LRTNRATESG YWKATGKDKD IFRGKALVGM KKTLVFYTGR 120 APKGEKSGWV MHEYRLHGKL HAAALGLLPG KPASSKVRTH ARHNEWVLCR VFKKSLVEVG 180 AAGGRKAAVV EMARGGSTSS SVADEITMSS VLPPLMDMSG AGAGAIDPAT TAHVTCFSNA 240 LEGQFFNPTA VHGHGGGDSS SPFMASFTQY GQLHHGVSLV QLLESCNGYN SLVDLAVAGS 300 QLQPAACGGE RERLSASQDT GLTSDVNPEI SSSSGQKFDH EAALWGY

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MEQQGQAGMD LPPGFRFHPT DEELITHYLA KKVADDRFAA LAVAEADLNK CEPWDLPSLA  60
KMGEKEWYFF CLKDRKYPTG LRTNRATESG YWKATGKDKD IFRGKALVGM KKTLVFYTGR  120
APKGEKSGWV MHEYRLHGKL HAAALGLLPG KPASSKVRTH ARHNEWVLCR VFKKSLVEVG  180
AAGGRKAAVV EMARGGSTSS SVADEITMSS VLPPLMDMSG AGAGAIDPAT TAHVTCFSNA  240
LEGQFFNPTA VHGHGGGDSS SPFMASFTQY GQLHHGVSLV QLLESCNGYN SLVDLAVAGS  300
QLQPAACGGE RERLSASQDT GLTSDVNPEI SSSSGQKFDH EAALWGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-53	2	175	6	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028181	0.0	AB028181.1 Oryza sativa mRNA for OsNAC2 protein, complete cds.
GenBank	AK061745	0.0	AK061745.1 Oryza sativa Japonica Group cDNA clone:001-038-F10, full insert sequence.
GenBank	AK071020	0.0	AK071020.1 Oryza sativa Japonica Group cDNA clone:J023080H09, full insert sequence.
GenBank	AK104626	0.0	AK104626.1 Oryza sativa Japonica Group cDNA clone:006-310-B03, full insert sequence.
GenBank	AL606460	0.0	AL606460.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855203	0.0	CR855203.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0219H12, complete sequence.
GenBank	CT828636	0.0	CT828636.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012A02, full insert sequence.
GenBank	CT830107	0.0	CT830107.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA218A09, full insert sequence.
GenBank	DQ520641	0.0	DQ520641.1 Oryza sativa (japonica cultivar-group) NAC domain protein (TIL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633922.1	0.0	NAC domain-containing protein 92
Refseq	XP_015633924.1	0.0	NAC domain-containing protein 92
Swissprot	Q9FLJ2	2e-96	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0E0KRH2	0.0	A0A0E0KRH2_ORYPU; Uncharacterized protein
STRING	OPUNC04G12870.2	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	5e-88	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]