PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC04G08530.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 246aa MW: 27175.7 Da PI: 7.6199 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.1 | 2.6e-14 | 11 | 50 | 2 | 41 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 rie+ +r + f kR++g+ KKAeEL vLCda v +++s OPUNC04G08530.2 11 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVIS 50 8**********************************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.2E-12 | 2 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.998 | 2 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.29E-17 | 4 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-10 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-17 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-10 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-10 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAVLC DAHVGFVVIS CSDVDAHPHH 60 FAAPATIENI VERYEHSLAA QKGVHGRRIL EKSKSKDFQV PKETILDKGP INDDMRPIDE 120 TDISTLNMDQ TIQIERLLED ELGWIRARKV VADRIARLQK KVQRKPATAE TESNSTEMPS 180 DHEKKQVGGG SQQSAEEEVE VVLSPSLSLG TGGRGDGGGG SAAEQRHRTP PAVDLNVPCR 240 DAGQLQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 211 | 219 | GGRGDGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111796 | 1e-109 | AK111796.1 Oryza sativa Japonica Group cDNA clone:J023103N18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637115.1 | 1e-128 | truncated transcription factor CAULIFLOWER D-like isoform X1 | ||||
TrEMBL | A0A0E0KPT6 | 1e-179 | A0A0E0KPT6_ORYPU; Uncharacterized protein | ||||
STRING | ORGLA04G0074800.1 | 1e-130 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 3e-18 | AGAMOUS-like 8 |