PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G07000.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 704aa    MW: 78786.9 Da    PI: 6.0854
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G07000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.73.4e-15492541455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      l Wtp L ++F++a+e L G+  A Pk+i+ +m+v+ + +++++ HLQk+Rl
  OPUNC04G07000.1 492 LMWTPHLQKKFLHALEIL-GE-DASPKQIKMIMDVDNIDRKQIATHLQKHRL 541
                      78****************.55.5****************************8 PP
2Response_reg22.55.7e-0938644052106
                      SCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHH CS
     Response_reg  52 empgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpee 106
                      +m +m+G+e+lk  re ++++++i+++++ +   +++++++Ga+  + Kp d   
  OPUNC04G07000.1 386 KMEEMNGFEFLKAARELHKSIQVIMMSTETTIYAMKRCVQLGAQFLVKKPLDVVT 440
                      6889**********************************************98655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.4E-431111No hitNo description
CDDcd001564.06E-5111182No hitNo description
Gene3DG3DSA:3.40.50.23006.8E-8112189No hitNo description
SuperFamilySSF521721.24E-6117190IPR011006CheY-like superfamily
PfamPF000724.2E-7386441IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23004.7E-11386448No hitNo description
SuperFamilySSF521721.18E-9386448IPR011006CheY-like superfamily
CDDcd001562.49E-7387433No hitNo description
SuperFamilySSF466895.38E-13486545IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-15487545IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-14492542IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MVEAKCHTNS ARALLYSLNF QDTASHMGLK SNRCFSVIVY SSPVNALIFL ENNAQDVAVV  60
LAAVDMKQLS GFQFLKAARM KHQDLQLITR YTMMRCVKLG ACFLVKKPPN EDTHVDLKVL  120
MMENTRELLQ VTVYTSPIKA LDFLENHAQD FDLVLAEVQM EELNGFAFLT ASKKIHKSIQ  180
VINDSSKNTK VIKNKGTIDC NQIATNAHWM QVPNGDDVYT AMRRSLHLGT VFDESNYSND  240
PCSNEDKAGE DEVGGYGCAN EANATYSSDD HNVVVPDVSC NIADNVSQEI MSKATTCVDY  300
QQQDTTPSDE PAAMSANEAN ATFSTGHLQQ VNVIVTCNGD GSQESIQKST CDDQHAPTGS  360
KPETFRLSQC LQVPQKHSIF FRIKQKMEEM NGFEFLKAAR ELHKSIQVIM MSTETTIYAM  420
KRCVQLGAQF LVKKPLDVVT IQNLWQHLDM KVLKMEKIKD LLQGGGDKST CASEMNSFPE  480
SQKDGTKRKY YLMWTPHLQK KFLHALEILG EDASPKQIKM IMDVDNIDRK QIATHLQKHR  540
LQLKKKLNKA SFTKGINEDT SNPRTEHQKN HPTCCTVTLQ PHSNTHQPAE TTMQILSEDV  600
EHNDVYAAMR RALQDGTVFD ESMYSSNPSG DEDDVVGDGR ADKANAIDSS GDHYQVTFVL  660
TSPRNVDYTQ EIMNKSTTFD DVQVTRGGKA TVSRLVDYSD SDSD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629630.0AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691407.11e-136PREDICTED: two-component response regulator ORR29-like
SwissprotQ7XKS90.0ORR28_ORYSJ; Two-component response regulator ORR28
TrEMBLA0A0E0KPA40.0A0A0E0KPA4_ORYPU; Uncharacterized protein
STRINGOPUNC04G07000.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.13e-10response regulator 18