PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G06890.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 364aa    MW: 40086.1 Da    PI: 8.5814
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G06890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.4e-1520116399
                      EE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      kvl+ps+ +k   ++++ +fa++       gg +++    ++ ++ g++W+v++  r ++g+ +l+ GW eF+ a+gL +g fvv++++g  ++
  OPUNC04G06890.1  20 KVLMPSSFHK---MRISDEFAAHLlgergdGGAPRR--AGRVVSTLGKVWDVEV-GRDGDGGAFLGHGWPEFAGAHGLGVGWFVVLRHEGGGGG 107
                      6777777665...679*****666***998666655..57888***********.455555699*************************999** PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                       l+vkvf++
  OPUNC04G06890.1 108 VLTVKVFDA 116
                      9******97 PP
2B334.53.6e-11125212696
                      ..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      tp+ v+++ r ++p kf++++  + ++ +  +  + ++ g+ W+++l  +k   ++++ +GW +F + +g+  gD+v+++++g+  f  ++kv
  OPUNC04G06890.1 125 TPPAVGQETRHRIPAKFVQHYiaE-EHLNIHMANILSPLGKFWRIEL--EKDELGMFFNGGWLQFLSFHGISPGDIVLLRHEGNLVF--KIKV 212
                      6889999999********888742.33333477899999********..****9**************************8876666..5555 PP
3B364.71.4e-20265350986
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS......-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg......rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 
                       + ++++ +lp  f++++g+++e+++tl++++++g      rsWev +++++++ +   +l +GW +F+++ngL +gD+++F++++
  OPUNC04G06890.1 265 TNYRKHLASLPGIFCKSIGLVEESTITLMIKNSRGrsssssRSWEVACSVNRNGHGccNLLPSGWMRFCQDNGLLVGDVCTFSVVE 350
                      44556677****************************************99777777789***********************9643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-1417119IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-518117IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-1519119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-1420115No hitNo description
PfamPF023623.7E-1220116IPR003340B3 DNA binding domain
PROSITE profilePS508639.64361117IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899120216IPR003340B3 DNA binding domain
SMARTSM010194.0E-6123216IPR003340B3 DNA binding domain
PfamPF023622.4E-9125210IPR003340B3 DNA binding domain
CDDcd100172.22E-10125213No hitNo description
Gene3DG3DSA:2.40.330.108.5E-14126218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-15133218IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.447257362IPR003340B3 DNA binding domain
SMARTSM010190.0014259362IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-14261364IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-16261360IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-18265360IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MPGGGDHADA GAAKAAMQLK VLMPSSFHKM RISDEFAAHL LGERGDGGAP RRAGRVVSTL  60
GKVWDVEVGR DGDGGAFLGH GWPEFAGAHG LGVGWFVVLR HEGGGGGVLT VKVFDATCCL  120
REFATPPAVG QETRHRIPAK FVQHYIAEEH LNIHMANILS PLGKFWRIEL EKDELGMFFN  180
GGWLQFLSFH GISPGDIVLL RHEGNLVFKI KVFGINGCKK DLKTRDDIRI QQSEPSNRVL  240
ETNMKHLFLQ GNVTRTVDWV KMIKTNYRKH LASLPGIFCK SIGLVEESTI TLMIKNSRGR  300
SSSSSRSWEV ACSVNRNGHG CCNLLPSGWM RFCQDNGLLV GDVCTFSVVE ATLWHVAIDR  360
VERC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629631e-153AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149601e-153AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-153CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977888.11e-102putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS741e-154Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A0E0KP880.0A0A0E0KP88_ORYPU; Uncharacterized protein
STRINGOPUNC04G06890.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.14e-15B3 family protein