PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G06870.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 412aa    MW: 45961.7 Da    PI: 9.4718
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G06870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.8e-1518113299
                      EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      fkvl+ps+  k   ++++++ a++       gg +++    ++ ++ g++W+v++  r ++g+ +l++GW eF+ a+gL +g fvv++++g  +
  OPUNC04G06870.1  18 FKVLMPSSFQK---MRISNELAAHLrgergdGGAPRR--AARVVSPLGKVWDVEV-GRDGDGGAFLGRGWAEFAGAHGLGVGWFVVLRHEG--G 103
                      78898888877...56999999555999997666666..6999************.455555699***********************876..4 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                        l+vkvf++
  OPUNC04G06870.1 104 DVLTVKVFDT 113
                      4469***997 PP
2B337.83.3e-121472281498
                      T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       r+++p kf++++  + ++ +s + ++ ++ g+ W+v+l  +k + ++++++GW +F + +g+   D+++++++g+  f  ++kvf 
  OPUNC04G06870.1 147 ERMRIPDKFVQHYivE-ENLNSNMAIILSPLGKFWRVEL--EKDQTGVFFKRGWFQFLSFHGISPDDVMLLRYEGNLVF--KIKVFG 228
                      589*******888963.33567789999***********..********************************997777..777765 PP
3B362.75.8e-20312410299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS....-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esg....rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      +k+ ++   l+++ l+l  +f++++g+++e+  t+tl++ + g    rsWev + +  +++++ y+l++GWk+F+++ngLk+gD+++F +++  
  OPUNC04G06870.1 312 IKKVINIFILERC-LSLAGTFCKSIGLIEES--TITLKNsPAGgsssRSWEVLCHVnqDRNGCCYLLGAGWKGFCHENGLKVGDVCTFNVVQ-- 400
                      6777777778888.**************776..78888867778999*******7744555555*************************655.. PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                       ++l++ v+++
  OPUNC04G06870.1 401 -TTLWHVVIDR 410
                      .5667766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.1E-617114IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-1617116IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-1317112No hitNo description
Gene3DG3DSA:2.40.330.101.7E-1518116IPR015300DNA-binding pseudobarrel domain
PfamPF023625.4E-1218113IPR003340B3 DNA binding domain
PROSITE profilePS508639.98260114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-17131230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-18132231IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.702134230IPR003340B3 DNA binding domain
CDDcd100175.36E-13135227No hitNo description
SMARTSM010191.0E-9137230IPR003340B3 DNA binding domain
PfamPF023623.0E-10147226IPR003340B3 DNA binding domain
SuperFamilySSF1019361.47E-16305411IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-18305411IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.9E-5312411IPR003340B3 DNA binding domain
PfamPF023621.4E-16322410IPR003340B3 DNA binding domain
PROSITE profilePS5086311.364325412IPR003340B3 DNA binding domain
CDDcd100176.46E-11331396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MASRGDHGAG VTRAMPLFKV LMPSSFQKMR ISNELAAHLR GERGDGGAPR RAARVVSPLG  60
KVWDVEVGRD GDGGAFLGRG WAEFAGAHGL GVGWFVVLRH EGGDVLTVKV FDTTCCLKDY  120
GALPPAAARD ASHKPQFLRV LLPGFMERMR IPDKFVQHYI VEENLNSNMA IILSPLGKFW  180
RVELEKDQTG VFFKRGWFQF LSFHGISPDD VMLLRYEGNL VFKIKVFGHN GWQKDFEAKN  240
IRIQQNTGDQ QEPSTFSRMK CNMKNQRPGE DSENQHETPP CSRKVSRKRK RSGGETEKKS  300
ASIYEIGPPS WIKKVINIFI LERCLSLAGT FCKSIGLIEE STITLKNSPA GGSSSRSWEV  360
LCHVNQDRNG CCYLLGAGWK GFCHENGLKV GDVCTFNVVQ TTLWHVVIDR SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629635e-70AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149605e-70AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447504.21e-127putative B3 domain-containing protein Os04g0346900
RefseqXP_015691403.11e-127PREDICTED: putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS741e-169Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A0E0KP860.0A0A0E0KP86_ORYPU; Uncharacterized protein
STRINGOPUNC04G06870.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-13B3 family protein