PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G06860.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 418aa    MW: 46085.9 Da    PI: 9.9444
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G06860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.42.9e-1420112399
                      EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      kvl+ps+ +k   +++  + a++      g   +   t ++ ++ g++W+v + +r ++gr +l++GW eF+ a+gL +g fvv+++dg  ++ 
  OPUNC04G06860.1  20 KVLVPSSFGK---MRICDELAAQLvgvgvG---APRATARVASPLGKVWDVGV-VRDGDGRAFLGSGWAEFAAAHGLGVGWFVVLRHDG--GGV 104
                      6666666665...45888888777887532...22359***************.688888899***********************765..666 PP

                      .EEEEE-S CS
               B3  92 lvvkvfrk 99 
                      l v +f++
  OPUNC04G06860.1 105 LAVEAFDT 112
                      78888876 PP
2B346.66.3e-151522311496
                      T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + +++p kf+++h  +++ +s + ++ ++ g+sW+++l  +k + ++++++GW +F + +++  gD+v+F+++g+  f  +++v
  OPUNC04G06860.1 152 DKMRIPGKFVRDHiTQENLNSNMAKILSPLGKSWRIEL--DKDRLGVFFGGGWLQFLSFHRISRGDVVIFRYEGNLVF--KISV 231
                      5699*********9444567889***************..*******************************9987666..4444 PP
3B3727.5e-23318407186
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.....rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                      ++k++++++vl++++++l  +f+e++g  +e++++l+++++s      rsWev    r+++++ y+l++GW++F+++ngLk+gD++vF++++
  OPUNC04G06860.1 318 WIKKEINEYVLERCIVSLACTFCESIGFAEESTIMLMINTTSTqgggsRSWEVAG--RRYKDAcYLLGRGWRRFCEDNGLKVGDVCVFTVVE 407
                      789***********************9998888888887776688**********..9999999************************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.5E-418113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-1419116IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-1120111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-1320115IPR015300DNA-binding pseudobarrel domain
CDDcd100174.19E-1220111No hitNo description
PROSITE profilePS5086310.13759113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-17135235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-18136235IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.619139235IPR003340B3 DNA binding domain
CDDcd100171.11E-14140232No hitNo description
SMARTSM010195.9E-11142235IPR003340B3 DNA binding domain
PfamPF023629.7E-13152227IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-15314415IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-17315415IPR015300DNA-binding pseudobarrel domain
PfamPF023628.0E-15318407IPR003340B3 DNA binding domain
PROSITE profilePS5086311.914318418IPR003340B3 DNA binding domain
SMARTSM010193.1E-5319416IPR003340B3 DNA binding domain
CDDcd100174.50E-9339404No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MVGSRGDHGG GGAARATQLK VLVPSSFGKM RICDELAAQL VGVGVGAPRA TARVASPLGK  60
VWDVGVVRDG DGRAFLGSGW AEFAAAHGLG VGWFVVLRHD GGGVLAVEAF DTTCCLKEFG  120
ASPAAMTIRS GRATDTSRKP QFLTVLLPGL MDKMRIPGKF VRDHITQENL NSNMAKILSP  180
LGKSWRIELD KDRLGVFFGG GWLQFLSFHR ISRGDVVIFR YEGNLVFKIS VFGVNGLLKD  240
FKSKGINIHQ STGEQQEAPS FSRKKCNKKN SRFREDDEIQ QEMPCSRKGS GNKGRASDRE  300
TKRMKKTRSV YEIGPRSWIK KEINEYVLER CIVSLACTFC ESIGFAEEST IMLMINTTST  360
QGGGSRSWEV AGRRYKDACY LLGRGWRRFC EDNGLKVGDV CVFTVVESTL WRVDVERC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629631e-98AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149601e-98AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-98CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551081e-98CR855108.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0111I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881011.11e-157putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS750.0Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A0E0KP850.0A0A0E0KP85_ORYPU; Uncharacterized protein
STRINGOPUNC04G06860.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.15e-17B3 family protein