PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G36760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 36071 Da PI: 4.5603 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.1 | 2.4e-21 | 9 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknra.....tk. 79 l+pG+ F+P+d+ l++ +L++k+++ ++e+e+ i+++d+y+++P +L + ++++++ wyfF++ + +++ t+ r++ra t OPUNC03G36760.1 9 LQPGYAFRPSDDHLITLFLRPKISKVPFEFEDWlINHADVYSADPAELVAehrpapGTQGSSSVWYFFCSPRYTSKrrTSGRRRRAigggcTGg 102 579***************************9988**************7446676655667789*****9876555225668888755554224 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy.......kgrapkgektdWvmheyrl 128 +++Wk+ g +k+v+ ++g+ vg + + + +g+a++ ++ W+m ey l OPUNC03G36760.1 103 ESVWKSEGGKKAVIGADGRRVGYLQKFSYGvyessssSGSARTFTRLGWCMTEYGL 158 778********************999999655776666788888899*******76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-31 | 3 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.671 | 9 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-13 | 11 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MAAADEIALQ PGYAFRPSDD HLITLFLRPK ISKVPFEFED WLINHADVYS ADPAELVAEH 60 RPAPGTQGSS SVWYFFCSPR YTSKRRTSGR RRRAIGGGCT GGESVWKSEG GKKAVIGADG 120 RRVGYLQKFS YGVYESSSSS GSARTFTRLG WCMTEYGLDD AIDGADQQVL CKVYRSPRAV 180 CAEARTAAKS ADSSCSGSKR KADDVVNHLE EAPPSARPRQ EVRSEHDGQP ELLPELDLDA 240 LLSAPTDDKL GVEFDTATTE QYMRYLMNDE PLPWAPTMEV VDDGGRGDGD EFIKTANGPC 300 IEEEIIERLA AGQTLDEILG TDHGEQVFD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629669.1 | 1e-169 | NAC domain-containing protein 71-like | ||||
Refseq | XP_015629670.1 | 1e-169 | NAC domain-containing protein 71-like | ||||
TrEMBL | A0A0E0KL06 | 0.0 | A0A0E0KL06_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G36710.1 | 0.0 | (Oryza punctata) | ||||
STRING | OPUNC03G36760.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03200.1 | 5e-10 | NAC domain containing protein 45 |