PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G36030.5

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 373aa MW: 40584.5 Da PI: 8.4864

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G36030.5	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	23.3	1.7e-07	112	133	1	22
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 s+y+GV++++++grW+++I+d+ OPUNC03G36030.5 112 SQYRGVTFYRRTGRWESHICDY 133 78******************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	8.623	113	207	IPR001471	AP2/ERF domain
CDD	cd00018	2.09E-13	164	209	No hit	No description
SuperFamily	SSF54171	4.51E-6	164	207	IPR016177	DNA-binding domain
SMART	SM00380	3.5E-13	165	213	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MVLDLNVESP EGSGTSSSSV LNSVDAGGGG GGFRFDLLGS SPDEDECSGE HQLPVASGIV 60 TRQLLPPTLA SPAPAPTAAP VWQPRRAAED VALAQRPVVA KKTRRGPRSR SSQYRGVTFY 120 RRTGRWESHI CDYEDDLKQM RNWTKEEFVH ILRRQSTGFA RGSSKFRGVT LHKCGRWEAR 180 MGQLLGKKAY DRAAIRFNGR EAVTNFQPAS YNVDALPDAG NEAIVDGDLD LDLRISQPNA 240 LDSKRDVTAA GLQLTCDSPE SSNISVHQPM GSSPQWTVHH QSTALPPQHQ LLYPSACLGF 300 LPNLQKRPME RRPELGPVPF PTQGWQMQAP SHLPLLHAAA SSGFSAGAGV AAADPRRQPP 360 FPADHPFYFP PNA

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MVLDLNVESP EGSGTSSSSV LNSVDAGGGG GGFRFDLLGS SPDEDECSGE HQLPVASGIV  60
TRQLLPPTLA SPAPAPTAAP VWQPRRAAED VALAQRPVVA KKTRRGPRSR SSQYRGVTFY  120
RRTGRWESHI CDYEDDLKQM RNWTKEEFVH ILRRQSTGFA RGSSKFRGVT LHKCGRWEAR  180
MGQLLGKKAY DRAAIRFNGR EAVTNFQPAS YNVDALPDAG NEAIVDGDLD LDLRISQPNA  240
LDSKRDVTAA GLQLTCDSPE SSNISVHQPM GSSPQWTVHH QSTALPPQHQ LLYPSACLGF  300
LPNLQKRPME RRPELGPVPF PTQGWQMQAP SHLPLLHAAA SSGFSAGAGV AAADPRRQPP  360
FPADHPFYFP PNA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:22003982, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00615	PBM	Transfer from AT2G28550	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269\|PubMed:22003982, ECO:0000305\|PubMed:20017947, ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY685113	0.0	AY685113.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D2 (AP2D2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650798.1	0.0	PREDICTED: floral homeotic protein APETALA 2-like
Swissprot	Q84TB5	0.0	AP22_ORYSJ; APETALA2-like protein 2
TrEMBL	A0A0E0KKR8	0.0	A0A0E0KKR8_ORYPU; Uncharacterized protein
STRING	OPUNC03G36030.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	8e-53	related to AP2.7

Publications ? help Back to Top
Lee DY,An G Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]