PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC03G36030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 445aa MW: 48543.6 Da PI: 8.2327 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 112 | 161 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OPUNC03G36030.1 112 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 161 78*******************......55************************998 PP | |||||||
2 | AP2 | 42 | 2.3e-13 | 204 | 254 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ +++g OPUNC03G36030.1 204 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAYDRAAIRFNG 254 79********.7******...5...334336**********99**********99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.62E-16 | 112 | 170 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.53E-11 | 112 | 171 | No hit | No description |
Pfam | PF00847 | 2.0E-9 | 112 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-31 | 113 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.622 | 113 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-17 | 113 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-17 | 204 | 262 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-8 | 204 | 254 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.30E-26 | 204 | 264 | No hit | No description |
SMART | SM00380 | 4.4E-33 | 205 | 268 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.936 | 205 | 262 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-16 | 205 | 262 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 206 | 217 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 244 | 264 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 445 aa Download sequence Send to blast |
MVLDLNVESP EGSGTSSSSV LNSVDAGGGG GGFRFDLLGS SPDEDECSGE HQLPVASGIV 60 TRQLLPPTLA SPAPAPTAAP VWQPRRAAED VALAQRPVVA KKTRRGPRSR SSQYRGVTFY 120 RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GLEADINFNL SDYEDDLKQM 180 RNWTKEEFVH ILRRQSTGFA RGSSKFRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDTEVE 240 AARAYDRAAI RFNGREAVTN FQPASYNVDA LPDAGNEAKA HQTPFLIAIT VLSLAIVDGD 300 LDLDLRISQP NALDSKRDVT AAGLQLTCDS PESSNISVHQ PMGSSPQWTV HHQSTALPPQ 360 HQLLYPSACL GFLPNLQKRP MERRPELGPV PFPTQGWQMQ APSHLPLLHA AASSGFSAGA 420 GVAAADPRRQ PPFPADHPFY FPPNA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY685113 | 0.0 | AY685113.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D2 (AP2D2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650798.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like | ||||
Swissprot | Q84TB5 | 0.0 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | A0A0E0KKR4 | 0.0 | A0A0E0KKR4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G36030.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2448 | 38 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36920.2 | 9e-88 | AP2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|