PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G32700.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 334aa    MW: 36789.4 Da    PI: 6.7966
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G32700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-092462812055
                      HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  OPUNC03G32700.1 246 YKWPYPSEAEKMTLAQATGLDQKQINNWFINQRKRH 281
                      5679*****************************885 PP
2ELK43.18.8e-15201222122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKhqLlrKY+g+Lg+L+qEFs
  OPUNC03G32700.1 201 ELKHQLLRKYGGSLGDLRQEFS 222
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-1867111IPR005540KNOX1
PfamPF037901.1E-1868107IPR005540KNOX1
SMARTSM012564.5E-25122174IPR005541KNOX2
PfamPF037911.2E-19132172IPR005541KNOX2
SMARTSM011885.4E-8201222IPR005539ELK domain
PROSITE profilePS5121311.418201221IPR005539ELK domain
PfamPF037892.5E-11201222IPR005539ELK domain
PROSITE profilePS5007112.762221284IPR001356Homeobox domain
SMARTSM003892.9E-12223288IPR001356Homeobox domain
SuperFamilySSF466897.27E-19223289IPR009057Homeodomain-like
CDDcd000863.88E-15224284No hitNo description
Gene3DG3DSA:1.10.10.601.3E-27226285IPR009057Homeodomain-like
PfamPF059202.6E-17241280IPR008422Homeobox KN domain
PROSITE patternPS000270259282IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MESFAALAGG GSSTTARLPE LIPPENPDHS SPPPLLYQLL AGPASSARHG QHHAAVKGQI  60
SPAGAEAAVK AEIMSHPQYS ALLAAYLGCK RVGAPPDVLT KLTAVPAAQQ LDAADGHPRR  120
RHEPRRDDDP DQLDQFMDAY CTMLTRYREE LERPIQEAAE FFSRVETQLD SIADSNCDGL  180
GSSEEEQDTS CPEEIDPSDK ELKHQLLRKY GGSLGDLRQE FSKRTKKGKL PKEARQKLLQ  240
WWELHYKWPY PSEAEKMTLA QATGLDQKQI NNWFINQRKR HWKPTPAAVA AFVPTMEAAT  300
GGGFRHSHGG GAAAALPLYM GRPFVVDSMY RLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288841e-177AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879466.10.0homeobox protein knotted-1-like 8 isoform X1
SwissprotQ10ED20.0KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A0E0KJJ50.0A0A0E0KJJ5_ORYPU; Uncharacterized protein
STRINGOPUNC03G32700.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-74KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]