PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G31970.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 316aa    MW: 33147.3 Da    PI: 8.3601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G31970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.14.9e-06152198354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ n+r r RR+r+ +++  L++l+ +      +K + a++L +A  YI+ L
  OPUNC03G31970.1 152 TTTNKRPRVRRERLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 198
                      678************************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.754149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-12151210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-7154207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-5155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-5155203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVKEEEIITE AAGARGYMEM LGLGDEAADY LMCLSPSSYL SSPAASTTTA VASPTCASYM  60
APHPYHHLLS FSGQDQYHGD DVFGFQYYGG DHVIPAVVPQ KSSPTTECSS SVSSMSSSPT  120
ATAISSSKSP ASKKKGSRGC DQRKATAPAA ATTTNKRPRV RRERLGERII ALQQLVSPFG  180
KSDTASVLHE ALGYIRFLHD QVQVLSSPYL QRLPPSARVP EQERSAAGVV VAAAEEQPPA  240
LRPSDLRSRG LCLVPISCTE HVAGGNGNGN GADLWSVAAG MAKATTTVTA AVERSKKAAA  300
ATAALLRGDR PGQQLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728330.0AK072833.1 Oryza sativa Japonica Group cDNA clone:J023136C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690492.11e-172PREDICTED: transcription factor bHLH110-like
RefseqXP_015690493.11e-172PREDICTED: transcription factor bHLH110-like
TrEMBLA0A0E0KJA00.0A0A0E0KJA0_ORYPU; Uncharacterized protein
STRINGOPUNC03G31970.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-24bHLH family protein