PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G26200.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 350aa    MW: 37695.9 Da    PI: 6.941
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G26200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.12.3e-1848115268
         trihelix   2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                      Wt  e+++Liea++++++  r ++ +  ++W++v +++++rg++rs++qC+++w+nl ++ykk++++e
  OPUNC03G26200.1  48 WTLPETMLLIEAKKRVHDGRRpAADQGLARWRWVEDYCWRRGCRRSQNQCNDRWDNLMRDYKKVRAQE 115
                      *************99998888357899*************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.94440105IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-542107IPR009057Homeodomain-like
SuperFamilySSF466892.87E-643107IPR009057Homeodomain-like
PfamPF138371.3E-1446117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDAGGSGTDA LLGQEEDEEA MNAMAAASTA NAMAVAVAVA REYRRGNWTL PETMLLIEAK  60
KRVHDGRRPA ADQGLARWRW VEDYCWRRGC RRSQNQCNDR WDNLMRDYKK VRAQELAAGG  120
GGGGLESYWV MGRAERKERG LPANLLREIY DAMGEVVERR MSSGGGGAVF LAGASSSGSG  180
GLADVPAMAM QASPLAQLLP RPLETTANCS SGSPERKRRR PSLDNQPPWG SITTSTPPAT  240
GRQGHQEHHH DDDEYAHHGA DGSSDDDDDG LGGAIGRCAA ILSVALENRE ASEERRHREV  300
IAAEERRGRA RQARREAGEQ CMAGLAAAVS QLAGSMLALA AKRRGPADPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215219RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1357920.0AC135792.3 Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879661.11e-169trihelix transcription factor ASR3
TrEMBLA0A0E0KH660.0A0A0E0KH66_ORYPU; Uncharacterized protein
STRINGOPUNC03G26200.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-39Trihelix family protein