PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC03G25190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 331aa MW: 34483.6 Da PI: 9.554 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.2 | 3.8e-30 | 150 | 206 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+++e++l k+rkpylheSRh+hA+rR+RgsgGrF OPUNC03G25190.1 150 DAPIYVNAKQYEGILRRRRARAKAQRENRL-VKGRKPYLHESRHRHAMRRARGSGGRF 206 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.8E-33 | 148 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.01 | 149 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.4E-23 | 152 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-27 | 152 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.4E-23 | 183 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 331 aa Download sequence Send to blast |
MLSFKRSHEG FGHVAAAGAG PQQQPWWAGS QLLYGEASPE EAALRDGGQF QVVPGGRAAL 60 DPAAAAAAAP EPEKTAMPKR GGGGGAPEVL KFSVFSDNLE PGDTGEKTRE HSATIAMQSP 120 LPEYNGHFEL GLGQSMSGGR MLLPLNAPAD APIYVNAKQY EGILRRRRAR AKAQRENRLV 180 KGRKPYLHES RHRHAMRRAR GSGGRFLNTK KEAAAGGGSK TPLASLISPV DIVHPGSRGG 240 GGGGRASSLS GSDVSSPGGG MYDHHDVVVD AADHYSSIDH HIRTPFFTPL PIIMDGGGGD 300 HASHSAAAAA VAAPFRWATA AGDGCCELLK A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 5e-18 | 150 | 208 | 2 | 61 | HAPB protein |
4g92_A | 5e-18 | 150 | 208 | 2 | 61 | HAPB protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 190 | 199 | RHRHAMRRAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB288034 | 0.0 | AB288034.1 Oryza sativa Japonica Group OsHAP2H mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK106398 | 0.0 | AK106398.1 Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628114.1 | 1e-150 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
TrEMBL | A0A0E0KGU7 | 0.0 | A0A0E0KGU7_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G25190.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G14020.1 | 5e-23 | nuclear factor Y, subunit A6 |