PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G24100.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 764aa MW: 85889.7 Da PI: 8.396

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G24100.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.4	5.6e-18	42	122	14	99
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +v+p +fa++++g s ++ l+++sg++W++ + +++ + vl++GWkeFv+ ng++e D ++F+++g s+f v +f+ OPUNC03G24100.1 42 KSMVVPTRFANNFNGH--ISEDVNLKSPSGKTWSIGV--ANSDTGeLVLRSGWKEFVDGNGVQEDDCLLFRYSGVSSF--DVLIFDP 122 459*****888666..6779***********..5555555*************************99999..8888875 PP
2	B3	34.8	2.9e-11	264	332	17	85
E--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ++ +f+ ++ g+ ++ ++++e s ++W v++ r +s++ + ++GW++F+++ngL + D+++F+l OPUNC03G24100.1 264 GVSPEFTGRYLGPVAR--EVVMERGSTggrEEWHVRFVRRECSRG-FHGTGWRQFARDNGLLAHDVCLFELR 332 5666777777445444..6888874445899****76777666.5788******************64 PP
3	B3	49.1	1e-15	434	496	34	99
SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + l+++sg++W++ + ++++ + vl++GWkeFv+ ng++egD+++F+++g s+f v +f+ OPUNC03G24100.1 434 DHMNLRSPSGKTWSIGV--SNSDAGeLVLQSGWKEFVDGNGIEEGDSLLFRYSGVSSF--DVLIFDP 496 2599***********..5555445*************************99999..8888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.4E-22	27	125	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.73E-22	28	128	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.649	29	123	IPR003340	B3 DNA binding domain
SMART	SM01019	5.7E-9	32	123	IPR003340	B3 DNA binding domain
CDD	cd10017	5.19E-17	40	121	No hit	No description
Pfam	PF02362	8.7E-15	42	121	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	5.69E-14	240	336	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.7E-14	240	356	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.40E-9	244	331	No hit	No description
SMART	SM01019	0.027	246	347	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.601	248	358	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.6E-9	263	332	IPR003340	B3 DNA binding domain
SMART	SM01019	2.4E-4	396	497	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.8E-18	413	499	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.2E-12	418	495	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.96E-16	433	501	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.10E-12	436	495	No hit	No description
PROSITE profile	PS50863	13.648	436	497	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.92E-6	706	731	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	7.443	706	747	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.2E-5	708	754	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005773	Cellular Component	vacuole
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADDSK HFLTYMVGDF TKSMVVPTRF ANNFNGHISE 60 DVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDGNGVQ EDDCLLFRYS GVSSFDVLIF 120 DPSGCEKASP HFVENRGFGR SEKFAGAEGG GRNVDKNGHH QHQLEMTLHK KSSRCRSIPR 180 ACKRGLFSDE IEQDHRDEKE DDDEDEKDGY YFCRHGGRVT EYNLTEGDKE EISRVPVPVE 240 PGNPVFVKVI HASHLLASRY TTVGVSPEFT GRYLGPVARE VVMERGSTGG REEWHVRFVR 300 RECSRGFHGT GWRQFARDNG LLAHDVCLFE LRMVGGGGGG LRHRSRRPTM TVHVLRRVRG 360 RFAMYHSDKT VRVPSEGLAQ CFTRLSAATS LGMVTFLGAL LRYPSSLSQR ESLGKNCSVC 420 KEWQEHCYWS HMADHMNLRS PSGKTWSIGV SNSDAGELVL QSGWKEFVDG NGIEEGDSLL 480 FRYSGVSSFD VLIFDPSGCE KASRFGRAEK FAGAEQGGRN GRRTPPIVDG DNGHHHHLEM 540 TLHRNSGRSI PRACKRSLFS DETEQDQQEN DDEDVVAAAE GSHGGYYFSR HGRISRVPVP 600 VEPGNPVFVQ VIHSSHARSS NYCIVLPLKS PPAHCTYQMA FQFPISWLKW TETVLLLFYY 660 VIVKACRRSS PGSICGRWRG MWCWRGRAGE GSDTPCSCTG RTPAGFYGGG WRQFAGDNHL 720 VAHDVCLFEL MMMDGASRRR SRSRRPTMTV HVLRRVRGRF VLLR

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

MGMLKIGKNC SVCKEWQEHC YWSHMADDSK HFLTYMVGDF TKSMVVPTRF ANNFNGHISE  60
DVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDGNGVQ EDDCLLFRYS GVSSFDVLIF  120
DPSGCEKASP HFVENRGFGR SEKFAGAEGG GRNVDKNGHH QHQLEMTLHK KSSRCRSIPR  180
ACKRGLFSDE IEQDHRDEKE DDDEDEKDGY YFCRHGGRVT EYNLTEGDKE EISRVPVPVE  240
PGNPVFVKVI HASHLLASRY TTVGVSPEFT GRYLGPVARE VVMERGSTGG REEWHVRFVR  300
RECSRGFHGT GWRQFARDNG LLAHDVCLFE LRMVGGGGGG LRHRSRRPTM TVHVLRRVRG  360
RFAMYHSDKT VRVPSEGLAQ CFTRLSAATS LGMVTFLGAL LRYPSSLSQR ESLGKNCSVC  420
KEWQEHCYWS HMADHMNLRS PSGKTWSIGV SNSDAGELVL QSGWKEFVDG NGIEEGDSLL  480
FRYSGVSSFD VLIFDPSGCE KASRFGRAEK FAGAEQGGRN GRRTPPIVDG DNGHHHHLEM  540
TLHRNSGRSI PRACKRSLFS DETEQDQQEN DDEDVVAAAE GSHGGYYFSR HGRISRVPVP  600
VEPGNPVFVQ VIHSSHARSS NYCIVLPLKS PPAHCTYQMA FQFPISWLKW TETVLLLFYY  660
VIVKACRRSS PGSICGRWRG MWCWRGRAGE GSDTPCSCTG RTPAGFYGGG WRQFAGDNHL  720
VAHDVCLFEL MMMDGASRRR SRSRRPTMTV HVLRRVRGRF VLLR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00468	DAP	Transfer from AT4G33280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063506	0.0	AK063506.1 Oryza sativa Japonica Group cDNA clone:001-116-F06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630283.1	0.0	B3 domain-containing protein Os03g0622100
Swissprot	Q10GM4	0.0	Y3221_ORYSJ; B3 domain-containing protein Os03g0622100
TrEMBL	A0A0E0KGE9	0.0	A0A0E0KGE9_ORYPU; Uncharacterized protein
STRING	OPUNC03G24100.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP562	34	179

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	6e-30	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]