PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G24050.4
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 318aa    MW: 36523.8 Da    PI: 9.3977
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G24050.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.38e-2028115298
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fkv+     ++  r+++p++f++ + gk   ++t++l++++g +++v++  +k+ g++ l++GWk Fv a++L+ gDf+vF++dg se   +v 
  OPUNC03G24050.4  28 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTMKLQSRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISEL--KVL 112
                      5555..44444.57********555666..6779***************..********************************985555..787 PP

                      EE- CS
               B3  96 vfr 98 
                      +f 
  OPUNC03G24050.4 113 IFG 115
                      775 PP
2B350.43.9e-162333171199
                      HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +ks+ + + +++a+ +    ke +  +t  +++g+ W+v ++ +k+ ++  l++GW++F+++n+L++gD+++F+l +++e +++v+++ k
  OPUNC03G24050.4 233 GKSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWKVLCR-TKGTRTKRLSTGWSRFAQENNLQVGDICLFELLKNKEYSMNVHIIPK 317
                      556667788888877742.23333..44.348*********5.444445789************************999999***99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.42224117IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-2325122IPR015300DNA-binding pseudobarrel domain
CDDcd100174.45E-2327114No hitNo description
PfamPF023629.1E-1827114IPR003340B3 DNA binding domain
SMARTSM010197.1E-1327117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-2337127IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-22215315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-19217315IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.125223318IPR003340B3 DNA binding domain
CDDcd100173.13E-14225316No hitNo description
SMARTSM010191.2E-8226318IPR003340B3 DNA binding domain
PfamPF023621.1E-14233317IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MRRPGARCRE GHAHFNGNQI DGQDKNFFKV MIGRFRERMI IPNEFLQYFR GKIPRTMKLQ  60
SRDGCTYDVQ VTKNLGKISL QSGWKAFVTA HDLQMGDFLV FSYDGISELK VLIFGPSGCE  120
KVHSSSFSHC GEKWEEPLHI SSSSHDLPVK SPISVSKSEA QWDSSEQENN TANIEEVALQ  180
GDDLQVHPVL NCILPKHTRL TDMQKQQLES KVRAIHSEIP IYGCILRKSR VHGKSQTVDI  240
CREYADVYLP FKELNMTLQR HGKNWKVLCR TKGTRTKRLS TGWSRFAQEN NLQVGDICLF  300
ELLKNKEYSM NVHIIPKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-160CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880059.10.0putative B3 domain-containing protein Os03g0621600 isoform X2
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0E0KGE30.0A0A0E0KGE3_ORYPU; Uncharacterized protein
TrEMBLA0A0E0KGE40.0A0A0E0KGE4_ORYPU; Uncharacterized protein
STRINGOPUNC03G24050.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-27B3 family protein