PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G24050.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 318aa MW: 36523.8 Da PI: 9.3977 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.3 | 8e-20 | 28 | 115 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 fkv+ ++ r+++p++f++ + gk ++t++l++++g +++v++ +k+ g++ l++GWk Fv a++L+ gDf+vF++dg se +v OPUNC03G24050.3 28 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTMKLQSRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISEL--KVL 112 5555..44444.57********555666..6779***************..********************************985555..787 PP EE- CS B3 96 vfr 98 +f OPUNC03G24050.3 113 IFG 115 775 PP | |||||||
2 | B3 | 50.4 | 3.9e-16 | 233 | 317 | 11 | 99 |
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +ks+ + + +++a+ + ke + +t +++g+ W+v ++ +k+ ++ l++GW++F+++n+L++gD+++F+l +++e +++v+++ k OPUNC03G24050.3 233 GKSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWKVLCR-TKGTRTKRLSTGWSRFAQENNLQVGDICLFELLKNKEYSMNVHIIPK 317 556667788888877742.23333..44.348*********5.444445789************************999999***99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.422 | 24 | 117 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.1E-23 | 25 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.45E-23 | 27 | 114 | No hit | No description |
Pfam | PF02362 | 9.1E-18 | 27 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-13 | 27 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-23 | 37 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-22 | 215 | 315 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-19 | 217 | 315 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.125 | 223 | 318 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.13E-14 | 225 | 316 | No hit | No description |
SMART | SM01019 | 1.2E-8 | 226 | 318 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 233 | 317 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MRRPGARCRE GHAHFNGNQI DGQDKNFFKV MIGRFRERMI IPNEFLQYFR GKIPRTMKLQ 60 SRDGCTYDVQ VTKNLGKISL QSGWKAFVTA HDLQMGDFLV FSYDGISELK VLIFGPSGCE 120 KVHSSSFSHC GEKWEEPLHI SSSSHDLPVK SPISVSKSEA QWDSSEQENN TANIEEVALQ 180 GDDLQVHPVL NCILPKHTRL TDMQKQQLES KVRAIHSEIP IYGCILRKSR VHGKSQTVDI 240 CREYADVYLP FKELNMTLQR HGKNWKVLCR TKGTRTKRLS TGWSRFAQEN NLQVGDICLF 300 ELLKNKEYSM NVHIIPKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 1e-160 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880059.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X2 | ||||
Swissprot | Q851V5 | 0.0 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0E0KGE3 | 0.0 | A0A0E0KGE3_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0E0KGE4 | 0.0 | A0A0E0KGE4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G24050.1 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-27 | B3 family protein |