PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G24050.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 754aa    MW: 87153.6 Da    PI: 9.9962
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G24050.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.4e-1179151176
                      EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                      f+ v+++s+v+++ + + +++k+a+e+  gg+    ++lt  +++g++W+v++++++++ r +l+kGW++F ++n+L+ 
  OPUNC03G24050.2  79 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVQFCISRRKLR-MLSKGWRKFSRDNELQK 151
                      77889999999999999**********76555....3455.667*********76666555.89*************86 PP
2B365.67.5e-211772581299
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ++r+++p kfa +++g    skt++le +sg +++v++  +kk +r vl++GW +Fv+a++L+ gDf+vF ++g  +f l v +f+ 
  OPUNC03G24050.2 177 FHKRMTIPDKFAHHFKGA--ISKTIKLEPRSGYTFDVQV--TKKLNRLVLESGWDSFVNAHDLNMGDFLVFNYNG--DFLLQVLIFDP 258
                      4568********665655..899****************..*******************************976..88889999985 PP
3B3352.5e-113874342980
                      -..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EE CS
               B3  29 kkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfv 80 
                      +  ++++l+l++ + +sW+v++ +y++ks++  lt+GWk+Fv++n L+ gD +
  OPUNC03G24050.2 387 N--NGQELMLRH-RDKSWKVRFyRYKNKSRK--LTQGWKRFVQDNYLRMGDLF 434
                      3..456788887.88******9444555555..9*****************87 PP
4B360.43.2e-19464550297
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fkv+     ++  r+++p++f++ + gk   ++t++l++++g +++v++  +k+ g++ l++GWk Fv a++L+ gDf+vF++dg se   +v 
  OPUNC03G24050.2 464 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTMKLQSRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISEL--KVL 548
                      5555..44444.57********555666..6779***************..********************************985555..777 PP

                      EE CS
               B3  96 vf 97 
                      +f
  OPUNC03G24050.2 549 IF 550
                      77 PP
5B348.51.6e-156707531299
                      HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ks+ + + +++a+ +    ke +  +t  +++g+ W+v ++ +k+ ++  l++GW++F+++n+L++gD+++F+l +++e +++v+++ k
  OPUNC03G24050.2 670 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWKVLCR-TKGTRTKRLSTGWSRFAQENNLQVGDICLFELLKNKEYSMNVHIIPK 753
                      56667777888877742.22333..44.348*********5.444445789************************999999***99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-2367150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-1572150IPR015300DNA-binding pseudobarrel domain
CDDcd100179.32E-1377150No hitNo description
SMARTSM010190.08479161IPR003340B3 DNA binding domain
PfamPF023624.3E-979150IPR003340B3 DNA binding domain
PROSITE profilePS508638.26180150IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-25161272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-23163261IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.872166259IPR003340B3 DNA binding domain
CDDcd100172.54E-20167257No hitNo description
SMARTSM010192.1E-8169259IPR003340B3 DNA binding domain
PfamPF023629.1E-19169257IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-15348434IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-12350434IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.728358459IPR003340B3 DNA binding domain
CDDcd100179.84E-10360434No hitNo description
SMARTSM010190.07361453IPR003340B3 DNA binding domain
PfamPF023621.3E-8373434IPR003340B3 DNA binding domain
PROSITE profilePS5086313.422460553IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-22461558IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-21463550No hitNo description
SMARTSM010197.1E-13463553IPR003340B3 DNA binding domain
PfamPF023623.6E-17463550IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-22473563IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-21651751IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18653751IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.125659754IPR003340B3 DNA binding domain
CDDcd100173.44E-13661752No hitNo description
SMARTSM010191.2E-8662754IPR003340B3 DNA binding domain
PfamPF023624.3E-14669753IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MPKTCKEILS SSDEHLRTQS LTTERQNQPD MDGIDKCNKK MKIEHASSSQ DDQETPTAEV  60
HRMKVEEKVQ AIHSNHPVFV AVMKKSNVTR QPCYVAISRK YANEYFPGGD QMLTLQRHGK  120
RWQVQFCISR RKLRMLSKGW RKFSRDNELQ KMRKLNTRST ARDDQEKYFF KVMIGDFHKR  180
MTIPDKFAHH FKGAISKTIK LEPRSGYTFD VQVTKKLNRL VLESGWDSFV NAHDLNMGDF  240
LVFNYNGDFL LQVLIFDPSG CEKSTSCSME NAIDHVGQGW KAHTDISTST HDQPNGNKHW  300
MQKDSSSEGN KIGNTRSSNT PSKFSGCILP RGTRLPGVQE KKMKEKIQTI HSKTPMYGNV  360
MTKCNVLGSP CALEITQQYD DAYLPYNNGQ ELMLRHRDKS WKVRFYRYKN KSRKLTQGWK  420
RFVQDNYLRM GDLFNKMRRP GARCREGHAH FNGNQIDGQD KNFFKVMIGR FRERMIIPNE  480
FLQYFRGKIP RTMKLQSRDG CTYDVQVTKN LGKISLQSGW KAFVTAHDLQ MGDFLVFSYD  540
GISELKVLIF GPSGCEKVHS SSFSHCGEKW EEPLHISSSS HDLPVKSPIS VSKSEAQWDS  600
SEQENNTANI EEVALQGDDL QVHPVLNCIL PKHTRLTDMQ KQQLESKVRA IHSEIPIYGC  660
ILRKSRVHGK SQTVDICREY ADVYLPFKEL NMTLQRHGKN WKVLCRTKGT RTKRLSTGWS  720
RFAQENNLQV GDICLFELLK NKEYSMNVHI IPKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972800.0AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880058.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0E0KGE30.0A0A0E0KGE3_ORYPU; Uncharacterized protein
STRINGOPUNC03G24050.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-25B3 family protein