PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G24050.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 785aa    MW: 90650.8 Da    PI: 9.9266
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G24050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.5e-1979175199
                      EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                      f+ v+++s+v+++ + + +++k+a+e+  gg+    ++lt  +++g++W+v++++++++ r +l+kGW++F ++n+L++gD+++F+l ++ + f
  OPUNC03G24050.1  79 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVQFCISRRKLR-MLSKGWRKFSRDNELQVGDTCLFELLKNeNPF 166
                      77889999999999999**********76555....3455.667*********76666555.89**********************99888*** PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                       ++v+++rk
  OPUNC03G24050.1 167 VMTVHIIRK 175
                      *****9986 PP
2B365.58e-212082891299
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ++r+++p kfa +++g    skt++le +sg +++v++  +kk +r vl++GW +Fv+a++L+ gDf+vF ++g  +f l v +f+ 
  OPUNC03G24050.1 208 FHKRMTIPDKFAHHFKGA--ISKTIKLEPRSGYTFDVQV--TKKLNRLVLESGWDSFVNAHDLNMGDFLVFNYNG--DFLLQVLIFDP 289
                      4568********665655..899****************..*******************************976..88889999985 PP
3B3352.6e-114184652980
                      -..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EE CS
               B3  29 kkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfv 80 
                      +  ++++l+l++ + +sW+v++ +y++ks++  lt+GWk+Fv++n L+ gD +
  OPUNC03G24050.1 418 N--NGQELMLRH-RDKSWKVRFyRYKNKSRK--LTQGWKRFVQDNYLRMGDLF 465
                      3..456788887.88******9444555555..9*****************87 PP
4B360.33.3e-19495581297
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fkv+     ++  r+++p++f++ + gk   ++t++l++++g +++v++  +k+ g++ l++GWk Fv a++L+ gDf+vF++dg se   +v 
  OPUNC03G24050.1 495 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTMKLQSRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISEL--KVL 579
                      5555..44444.57********555666..6779***************..********************************985555..777 PP

                      EE CS
               B3  96 vf 97 
                      +f
  OPUNC03G24050.1 580 IF 581
                      77 PP
5B348.41.6e-157017841299
                      HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ks+ + + +++a+ +    ke +  +t  +++g+ W+v ++ +k+ ++  l++GW++F+++n+L++gD+++F+l +++e +++v+++ k
  OPUNC03G24050.1 701 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWKVLCR-TKGTRTKRLSTGWSRFAQENNLQVGDICLFELLKNKEYSMNVHIIPK 784
                      56667777888877742.22333..44.348*********5.444445789************************999999***99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2967174IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-2372174IPR015300DNA-binding pseudobarrel domain
CDDcd100178.54E-2077174No hitNo description
PfamPF023621.3E-1779175IPR003340B3 DNA binding domain
SMARTSM010193.2E-1279176IPR003340B3 DNA binding domain
PROSITE profilePS5086313.3180174IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-25192303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-23194292IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.872197290IPR003340B3 DNA binding domain
CDDcd100173.09E-20198288No hitNo description
PfamPF023629.6E-19200288IPR003340B3 DNA binding domain
SMARTSM010192.1E-8200290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-15379465IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-12381465IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.728389490IPR003340B3 DNA binding domain
CDDcd100171.10E-9391465No hitNo description
SMARTSM010190.07392484IPR003340B3 DNA binding domain
PfamPF023621.4E-8404465IPR003340B3 DNA binding domain
PROSITE profilePS5086313.422491584IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-22492589IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-21494581No hitNo description
PfamPF023623.8E-17494581IPR003340B3 DNA binding domain
SMARTSM010197.1E-13494584IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-22504594IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-21682782IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-18684782IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.125690785IPR003340B3 DNA binding domain
CDDcd100173.91E-13692783No hitNo description
SMARTSM010191.2E-8693785IPR003340B3 DNA binding domain
PfamPF023624.6E-14700784IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MPKTCKEILS SSDEHLRTQS LTTERQNQPD MDGIDKCNKK MKIEHASSSQ DDQETPTAEV  60
HRMKVEEKVQ AIHSNHPVFV AVMKKSNVTR QPCYVAISRK YANEYFPGGD QMLTLQRHGK  120
RWQVQFCISR RKLRMLSKGW RKFSRDNELQ VGDTCLFELL KNENPFVMTV HIIRKLPVCG  180
QKMRKLNTRS TARDDQEKYF FKVMIGDFHK RMTIPDKFAH HFKGAISKTI KLEPRSGYTF  240
DVQVTKKLNR LVLESGWDSF VNAHDLNMGD FLVFNYNGDF LLQVLIFDPS GCEKSTSCSM  300
ENAIDHVGQG WKAHTDISTS THDQPNGNKH WMQKDSSSEG NKIGNTRSSN TPSKFSGCIL  360
PRGTRLPGVQ EKKMKEKIQT IHSKTPMYGN VMTKCNVLGS PCALEITQQY DDAYLPYNNG  420
QELMLRHRDK SWKVRFYRYK NKSRKLTQGW KRFVQDNYLR MGDLFNKMRR PGARCREGHA  480
HFNGNQIDGQ DKNFFKVMIG RFRERMIIPN EFLQYFRGKI PRTMKLQSRD GCTYDVQVTK  540
NLGKISLQSG WKAFVTAHDL QMGDFLVFSY DGISELKVLI FGPSGCEKVH SSSFSHCGEK  600
WEEPLHISSS SHDLPVKSPI SVSKSEAQWD SSEQENNTAN IEEVALQGDD LQVHPVLNCI  660
LPKHTRLTDM QKQQLESKVR AIHSEIPIYG CILRKSRVHG KSQTVDICRE YADVYLPFKE  720
LNMTLQRHGK NWKVLCRTKG TRTKRLSTGW SRFAQENNLQ VGDICLFELL KNKEYSMNVH  780
IIPKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972800.0AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880058.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0E0KGE20.0A0A0E0KGE2_ORYPU; Uncharacterized protein
STRINGOPUNC03G24050.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-25B3 family protein