PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G24010.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 563aa MW: 63776 Da PI: 9.1067

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G24010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.3	3.3e-19	33	117	5	98
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + s +++++ +++p+kf+e++ggk s+t+ le+++g+++ vk+ +k+ +++vl+ GW+ Fv+a++++e+D+++F+++++s+f v +++ OPUNC03G24010.1 33 M--SANFEHS-MIIPNKFLEQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLRCGWEAFVDAHQIEENDSLLFRHIENSRF--AVLILD 117 4..5556655.*********999..888************..*******************************99999..777776 PP
2	B3	50	5.3e-16	250	348	3	99
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 +++++s+v+++ + lv+ k++a++h +++s+t+tl+ ++r+W k+ +rk + +y+l ++W +Fv+ n+++egD+++F+l+ + ++f+ OPUNC03G24010.1 250 TIMKHSNVNSHhASLVIAKHYASAHF--PRTSQTITLKWqGKNRKWHPKFYIRKDQVGYILHGCWIDFVRHNHVNEGDICIFHLKkFTgRKFRA 341 677888888876789********8..456778999984677***77888888***********************98555688888 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ OPUNC03G24010.1 342 TVHLLRE 348 8888775 PP
3	B3	55.9	7.5e-18	463	559	5	99
-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 5 ltpsdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 + +s+v++ +++l ++fa+++ ++ e+ tltl + +g+ W+vk++ ++s++ ++t GW++Fv++n+L++ D+++F+l+ ++ ++ ++ OPUNC03G24010.1 463 MNKSNVGTDglYIITLGRQFATRYL-PEGEQ-TLTLLTtGTGKAWQVKMR-PRSSDARMFTLGWRDFVRDNRLQTEDICLFQLMtNNeRGLAMT 553 55556666522345899****93.33344.5555554999***4.44444589*********************994555666677 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ OPUNC03G24010.1 554 IHIIRH 559 777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.2E-21	24	121	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.86E-22	25	125	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.76	26	119	IPR003340	B3 DNA binding domain
CDD	cd10017	1.73E-18	27	117	No hit	No description
SMART	SM01019	2.7E-10	29	119	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-17	33	117	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.2E-18	239	336	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.97E-19	243	344	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.98E-19	246	347	No hit	No description
SMART	SM01019	2.6E-4	248	349	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.3E-15	249	348	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.251	249	349	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.2E-21	450	560	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.11E-19	452	560	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.29E-14	457	558	No hit	No description
SMART	SM01019	2.5E-9	459	560	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.8E-16	465	559	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.689	476	560	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MAGQGSQMKK SCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLEQ FGGKISRTVE 60 LESPKGNVYV VKVSKHMNKT VLRCGWEAFV DAHQIEENDS LLFRHIENSR FAVLILDSDG 120 CEKVFSCSGK RRASGVQERN ADPIDVSSST HDDTVQSSGG ERFARSESGS DSQHSKTAKL 180 GATCSSGRSG EDAKGSSTSE HESDYDLDDP QIAPMPGYVL SRGTSLSEAQ EEKLDMLVQD 240 IRPEIPLYVT IMKHSNVNSH HASLVIAKHY ASAHFPRTSQ TITLKWQGKN RKWHPKFYIR 300 KDQVGYILHG CWIDFVRHNH VNEGDICIFH LKKFTGRKFR ATVHLLRETN PHSFGALHIP 360 KRFESRNGRM RLKMTGDIRV SSTECRRGTM EPSTTNVKKE ADNDQCNNNQ GKRQEPLNFD 420 GPVGSSKPYL TADRVSLTEE QVRKVEEIAH SIQSEGPIYV SKMNKSNVGT DGLYIITLGR 480 QFATRYLPEG EQTLTLLTTG TGKAWQVKMR PRSSDARMFT LGWRDFVRDN RLQTEDICLF 540 QLMTNNERGL AMTIHIIRHN ERS

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MAGQGSQMKK SCDCCKRYVD HSNGKMKCFH RQMSANFEHS MIIPNKFLEQ FGGKISRTVE  60
LESPKGNVYV VKVSKHMNKT VLRCGWEAFV DAHQIEENDS LLFRHIENSR FAVLILDSDG  120
CEKVFSCSGK RRASGVQERN ADPIDVSSST HDDTVQSSGG ERFARSESGS DSQHSKTAKL  180
GATCSSGRSG EDAKGSSTSE HESDYDLDDP QIAPMPGYVL SRGTSLSEAQ EEKLDMLVQD  240
IRPEIPLYVT IMKHSNVNSH HASLVIAKHY ASAHFPRTSQ TITLKWQGKN RKWHPKFYIR  300
KDQVGYILHG CWIDFVRHNH VNEGDICIFH LKKFTGRKFR ATVHLLRETN PHSFGALHIP  360
KRFESRNGRM RLKMTGDIRV SSTECRRGTM EPSTTNVKKE ADNDQCNNNQ GKRQEPLNFD  420
GPVGSSKPYL TADRVSLTEE QVRKVEEIAH SIQSEGPIYV SKMNKSNVGT DGLYIITLGR  480
QFATRYLPEG EQTLTLLTTG TGKAWQVKMR PRSSDARMFT LGWRDFVRDN RLQTEDICLF  540
QLMTNNERGL AMTIHIIRHN ERS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100451	0.0	AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630232.2	0.0	LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
Swissprot	Q851W4	0.0	Y3205_ORYSJ; B3 domain-containing protein Os03g0620500
TrEMBL	A0A0E0KGD7	0.0	A0A0E0KGD7_ORYPU; Uncharacterized protein
STRING	OPUNC03G24010.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	5e-17	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]