PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G23990.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 561aa MW: 64290 Da PI: 8.5254

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G23990.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.4	2e-16	57	139	9	97
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++ + +++p+kf+++++g s+t+ le+++g ++ vk+ +k+ ++++l+ GW+ F +a++++e+D+++F+++++s+f v ++ OPUNC03G23990.1 57 SANFGHSMTIPNKFLDHFEGT--LSRTIELESPKGIVYIVKV--TKHMNKTILQCGWEAFLDAHHIEENDSLLFRHIENSRF--EVLIL 139 4444567******888877..899************..*******************************99999..66665 PP
2	B3	58.7	1e-18	271	370	1	98
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 f+ ++++s+v+++ ++lv+pk++a +h ++es+t+tl+ ++++W k+ +rk +++y+l + W +Fv++n++kegD+++F+l+ + f OPUNC03G23990.1 271 FVAIMKHSNVNSHrACLVIPKRYACAHF--PHESQTITLQRqGKNKKWHPKFYVRKDGSAYMLHGRWINFVRDNHVKEGDMCIFHLTkFTeGAF 362 6778888999888778******9997..457789999995666***77999999***********************885445777 PP ..EEEEE- CS B3 91 elvvkvfr 98 + +v+++r OPUNC03G23990.1 363 RATVHLLR 370 77777776 PP
3	B3	57.8	1.9e-18	462	557	5	99
-..-HHHHTT-E..E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 5 ltpsdvlksgrl..vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 + +s+v+++g+ ++ +fa+++ +++ e++ l++ +++ W+vk+ r +sg ++t+GW++Fv++n+L+ D+++F+l+++ s+ +++v OPUNC03G23990.1 462 MNKSNVGTNGLYtiIFGTQFAARY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVRDNRLQIEDICLFQLMNDeSTLTMTV 552 556666776543226679999999.3444455566777899*****..77777779**********************998*** PP EEE-S CS B3 95 kvfrk 99 +++r+ OPUNC03G23990.1 553 HIIRH 557 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.89E-20	48	148	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.6E-18	48	144	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.012	49	142	IPR003340	B3 DNA binding domain
SMART	SM01019	4.1E-5	52	142	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.4E-15	57	138	IPR003340	B3 DNA binding domain
CDD	cd10017	5.89E-15	57	140	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.8E-21	263	366	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-24	265	367	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.64E-22	269	370	No hit	No description
SMART	SM01019	3.9E-9	271	365	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.8E-18	271	371	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.197	272	372	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.1E-21	450	558	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.32E-19	451	558	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.53E-15	456	556	No hit	No description
SMART	SM01019	0.0011	458	558	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.914	458	558	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.5E-18	460	557	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence Send to blast
MRVLVDYLHL QLTYICYKFQ FTCMAEQDSQ MKKSCDWSKR YVDHLNGKMK CFHMQMSANF 60 GHSMTIPNKF LDHFEGTLSR TIELESPKGI VYIVKVTKHM NKTILQCGWE AFLDAHHIEE 120 NDSLLFRHIE NSRFEVLILD SDGCEKVFSC AGIKRTSSVK ERNAAPVDIS SSTHDETTQS 180 SGSKRIVRCQ KASDSQCGKT TKMAATSSLR ESGEEGTDSS TSEDESSYEL DDPQMSPGRN 240 YVLSRWTSLS EAQEEKVDML VQDIQPEIPV FVAIMKHSNV NSHRACLVIP KRYACAHFPH 300 ESQTITLQRQ GKNKKWHPKF YVRKDGSAYM LHGRWINFVR DNHVKEGDMC IFHLTKFTEG 360 AFRATVHLLR ETKSGSFGSF HTSHKRFDLR DGRMWPKVTG ARRVSSTEDR CNKGEGKRQD 420 SRGSSKPYLT ADRVSLTEEQ VRKLEEVVHP IQSEGPMYVS IMNKSNVGTN GLYTIIFGTQ 480 FAARYLPEGE QTLTLLMTGK SNAWQVKMRP RSGDAQMITT GWRHFVRDNR LQIEDICLFQ 540 LMNDESTLTM TVHIIRHNEK S

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence Send to blast

MRVLVDYLHL QLTYICYKFQ FTCMAEQDSQ MKKSCDWSKR YVDHLNGKMK CFHMQMSANF  60
GHSMTIPNKF LDHFEGTLSR TIELESPKGI VYIVKVTKHM NKTILQCGWE AFLDAHHIEE  120
NDSLLFRHIE NSRFEVLILD SDGCEKVFSC AGIKRTSSVK ERNAAPVDIS SSTHDETTQS  180
SGSKRIVRCQ KASDSQCGKT TKMAATSSLR ESGEEGTDSS TSEDESSYEL DDPQMSPGRN  240
YVLSRWTSLS EAQEEKVDML VQDIQPEIPV FVAIMKHSNV NSHRACLVIP KRYACAHFPH  300
ESQTITLQRQ GKNKKWHPKF YVRKDGSAYM LHGRWINFVR DNHVKEGDMC IFHLTKFTEG  360
AFRATVHLLR ETKSGSFGSF HTSHKRFDLR DGRMWPKVTG ARRVSSTEDR CNKGEGKRQD  420
SRGSSKPYLT ADRVSLTEEQ VRKLEEVVHP IQSEGPMYVS IMNKSNVGTN GLYTIIFGTQ  480
FAARYLPEGE QTLTLLMTGK SNAWQVKMRP RSGDAQMITT GWRHFVRDNR LQIEDICLFQ  540
LMNDESTLTM TVHIIRHNEK S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102169	0.0	AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628609.1	0.0	B3 domain-containing protein Os03g0620400 isoform X1
Swissprot	Q851W5	0.0	Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBL	A0A0E0KGD3	0.0	A0A0E0KGD3_ORYPU; Uncharacterized protein
STRING	OPUNC03G23990.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-18	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]