PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G23960.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 877aa    MW: 99022.8 Da    PI: 8.5017
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G23960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-15361161197
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++ +++p +f++++ggk   + t++le+++g  + v++    + +++vl+ GW+ Fv+a+++keg++++F+++++s+f   v ++
  OPUNC03G23960.1  36 DSKHSMIMPDRFVSHFGGK--IPGTIKLESPNGILYIVEV--IECLNKTVLQCGWEAFVDAHHIKEGESLLFRYIENSRF--EVLIL 116
                      566789*******888888..5669***************..999999***************************99999..66655 PP
2B338.91.5e-122473281798
                      E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3  17 vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                      v++  +a+ +   ++es t+tl+ +s  ++W  ++  r  ++ ++l++ Wk+Fv++n L+e D+++F  ++  ++ +++v+++r
  OPUNC03G23960.1 247 VISSCYASVYF--PRESATITLQRPSKrKKWYPRFYKRIDKSDHMLRGQWKNFVHDNCLQEEDICLFVPTKGgRSVTFTVHLLR 328
                      55555555554..56889******66659******66777777*************************7755588888888887 PP
3B347.53.3e-154465291498
                      T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + l l+ ++a+++  +   ++++tl+l+  +g  W+++l +   +k+++  +lt+GW++F+++n+L++gDf++F+l++ ++ ++ v++++
  OPUNC03G23960.1 446 CGLELSSRYAASYlpD---ANDQTLVLQC-KGMIWQINLVVhryTKGKR-WFLTTGWRKFAHDNRLRVGDFCLFELKK-KKLTMEVHIIS 529
                      6788899999999432...4555677655.9999999885544255554.67999********************987.99999999986 PP
4B352.49.5e-175566371198
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       + + +++p++f++++ggk   + t++le+++g  + v++  + + +++vl+ GW+ Fv+a+++k+gD+++F+++++ +f   v++++
  OPUNC03G23960.1 556 DSMHSMIIPNRFVSHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTVLQCGWEAFVDAHHIKVGDSLLFRHIENFCF--EVMILD 637
                      344669*******888888..5669***************..*******************************9987777..666665 PP
5B341.91.8e-137898701495
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                      ++l l  ++a++  ++ ++  + ++ ++ g++W+  ++   ++s r +l +GW +Fv++n+L++gD+++++l+++ ++ +++v+
  OPUNC03G23960.1 789 CQLELGARYAAAVHLPDRR--QTVVLQRMGQRWDTVMQTkIGRSTRRFLVNGWHRFVRDNRLRVGDICLLELKKHeRKLTMTVH 870
                      6677777777777777544..3566778*********77655556678899*********************976577766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-2025125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.29426119IPR003340B3 DNA binding domain
CDDcd100178.33E-1727117No hitNo description
Gene3DG3DSA:2.40.330.101.7E-1728120IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-729119IPR003340B3 DNA binding domain
PfamPF023621.2E-1337115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-18223329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-18223329IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0041230330IPR003340B3 DNA binding domain
CDDcd100173.58E-17230328No hitNo description
PROSITE profilePS5086310.207231330IPR003340B3 DNA binding domain
PfamPF023625.6E-11246329IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-18423529IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-17427529No hitNo description
SMARTSM010192.1E-9433531IPR003340B3 DNA binding domain
SuperFamilySSF1019364.97E-16446528IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-13446529IPR003340B3 DNA binding domain
PROSITE profilePS5086311.758472531IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-23543641IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-19546641IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.21546639IPR003340B3 DNA binding domain
CDDcd100178.33E-19548637No hitNo description
SMARTSM010196.7E-11549639IPR003340B3 DNA binding domain
PfamPF023623.5E-15556636IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-17765870IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-15766870IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-14771870No hitNo description
SMARTSM010190.008773876IPR003340B3 DNA binding domain
PfamPF023623.8E-11790871IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588810873IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MAGSNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSKHS MIMPDRFVSH FGGKIPGTIK  60
LESPNGILYI VEVIECLNKT VLQCGWEAFV DAHHIKEGES LLFRYIENSR FEVLILDSDD  120
CEKVFSCAGI RNSSCIQDKI VDPVDSSGSS SNETTQSSRS RNTANLTAMC SSSEKSGEDS  180
PSGYEFHESV DPLTPSWSDY VLSLRTYLSE AQKERVVAHI QDIQPEITVF VAVMKKCNLQ  240
SPAPYLVISS CYASVYFPRE SATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWKNFVHD  300
NCLQEEDICL FVPTKGGRSV TFTVHLLRAA ATHYRNGTDV HKIVGSSHDR MNTKMVSQIH  360
IKQTPGDGDN VSSESNKHGA SHESPENEDS DGPSEPPYII SKRRCRLSQL QKKKVEEKVR  420
AIQSEFPICV AIISKLSGGG GNRKFCGLEL SSRYAASYLP DANDQTLVLQ CKGMIWQINL  480
VVHRYTKGKR WFLTTGWRKF AHDNRLRVGD FCLFELKKKK LTMEVHIISN LQHYPETYLE  540
HLGGKMSCFL RRMTADSMHS MIIPNRFVSH FGGKIPGTIK LESPNGILYV VEVTECMNKT  600
VLQCGWEAFV DAHHIKVGDS LLFRHIENFC FEVMILDSDG CEKVFSCAGI KNSFCVQDKT  660
VDPVDTSGSS CDDTAQSSRS ERSAGCQRDT SNDRRNSTAS LNAVSSSSEE SENVSLKSNR  720
NGVSDESQEN EDSEGPADLP YILPCKSKSR LSSLQKKIVE EKVRSIRSEV PIYVAIMNRS  780
NVGLTSCPCQ LELGARYAAA VHLPDRRQTV VLQRMGQRWD TVMQTKIGRS TRRFLVNGWH  840
RFVRDNRLRV GDICLLELKK HERKLTMTVH TIFSHQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072060.0AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629380.10.0B3 domain-containing protein Os03g0619800
RefseqXP_015629381.10.0B3 domain-containing protein Os03g0619800
SwissprotQ6AV210.0Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A0E0KGD00.0A0A0E0KGD0_ORYPU; Uncharacterized protein
STRINGOPUNC03G23960.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-12B3 family protein