PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G23950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 544aa    MW: 61954.8 Da    PI: 8.8781
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G23950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.4e-16351171098
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++++ +++p kf++++gg+   s t++l++++g  + v++  + +++++vl+ GW+ Fv+a++++e+D+++F+++++s f   v +f+
  OPUNC03G23950.1  35 ASSRRSMIMPYKFVNHFGGDV--SGTIKLQSPNGILYVVEV--TECKNKTVLKCGWEAFVDAHHIEENDSLLFRHIENSHF--EVLIFD 117
                      45667799******8888884..449***************..9********************************99999..888887 PP
2B334.63.3e-112843424298
                      TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS
               B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98 
                      ++++W  ++  rk  ++ +l++ W eFvk+n+++e D++vF   ++  ++f+++v+++r
  OPUNC03G23950.1 284 KSKKWHPRFYKRKDARMNILRGSWVEFVKDNRVQEQDICVFVPAKDarRNFTFTVHLLR 342
                      679******77888889*************************55432577777777765 PP
3B345.31.6e-144535331092
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      + ++++l l  +fa++  ++ +++   ++ ++ g++W   +++r + +r ++t GW +Fv++n+L++gD+++++l+ + ++ ++
  OPUNC03G23950.1 453 TASRCQLELGARFAAAVRLPDRRQ--TVVLQRMGERWATVMQIRSRTRRLLIT-GWHRFVRDNHLRVGDICLLELKTHeRRLTM 533
                      456699***********9986664..666778*********999999998888.********************9864344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.83E-2323121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-2025120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.29426119IPR003340B3 DNA binding domain
CDDcd100171.97E-1828117No hitNo description
SMARTSM010192.0E-1129119IPR003340B3 DNA binding domain
PfamPF023622.0E-1435117IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-12257342IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.19264344IPR003340B3 DNA binding domain
CDDcd100171.23E-10264342No hitNo description
Gene3DG3DSA:2.40.330.103.8E-9280342IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.502284344IPR003340B3 DNA binding domain
PfamPF023622.7E-9284342IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-18433536IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-17434537IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-15439537No hitNo description
PROSITE profilePS5086310.997444539IPR003340B3 DNA binding domain
SMARTSM010194.6E-4445541IPR003340B3 DNA binding domain
PfamPF023622.4E-12454535IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MAGSGSCMKK SCVCCQRYLE HLGGKMSCFL RRMTASSRRS MIMPYKFVNH FGGDVSGTIK  60
LQSPNGILYV VEVTECKNKT VLKCGWEAFV DAHHIEENDS LLFRHIENSH FEVLIFDSDD  120
CEKVFSCAGI GNTCNSIQEK SSSSCDDTAE SSESEGFARN QKGSFSHRRR TANLASSSED  180
SGKSFVKLFA YMLNFGKIRI IILKFLVKFC TGEDSPSEHE SVESGDLETS QEPYVLSRRT  240
YLSEIQKEKV DALIQEIQPE TTVFVAIMRR SNVQLPTPFL RPCKSKKWHP RFYKRKDARM  300
NILRGSWVEF VKDNRVQEQD ICVFVPAKDA RRNFTFTVHL LRLAAAYSWG GTGVDRASSS  360
LGRTDVKSAS EISIKEEPID QEENVSSKNR NGVSDESEED EDSKGPADPP YIVPCKSRLS  420
QLQKKIVEEK VRSIQSKLPV YVAIMKKSNV ERTASRCQLE LGARFAAAVR LPDRRQTVVL  480
QRMGERWATV MQIRSRTRRL LITGWHRFVR DNHLRVGDIC LLELKTHERR LTMAVHPIFR  540
EHCC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1193990.0AK119399.1 Oryza sativa Japonica Group cDNA clone:001-132-D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633049.10.0B3 domain-containing protein Os03g0619600
RefseqXP_015633050.10.0B3 domain-containing protein Os03g0619600
SwissprotQ6AV220.0Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A0E0KGC90.0A0A0E0KGC9_ORYPU; Uncharacterized protein
STRINGOPUNC03G23950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]