PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G23930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 253aa MW: 25629.1 Da PI: 9.7103 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 112.6 | 1.8e-35 | 51 | 105 | 5 | 59 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ OPUNC03G23930.1 51 REQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRP 105 579*************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 27.559 | 52 | 106 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.9E-31 | 52 | 104 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 9.0E-23 | 53 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 54 | 90 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAPGALLLPP ASFKHHDVAA AAAAADSMQA CLQPLPPPAA ASGCNGSGGS REQCPRCASH 60 DTKFCYYNNY NTSQPRHFCR ACRRYWTLGG SLRNVPIGGS TRKRPRPPVR RPPVHFAAAA 120 AAPPPPPTSS QQAGLLGSLF ALGAAPLLEG RVGFDLGLGL PGPGHHVVAG GGAGEVAATG 180 LHGLGRGGPA AVATSSSAPL LWHTGLLDSS SNNVETWKMA AGGGAAMWPE FTAAAAQVGG 240 LMRGGAQQQP QLL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 106 | KRPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC107206 | 1e-106 | AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence. | |||
GenBank | AK119803 | 1e-106 | AK119803.1 Oryza sativa Japonica Group cDNA clone:002-176-F03, full insert sequence. | |||
GenBank | AP014959 | 1e-106 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880163.1 | 5e-83 | dof zinc finger protein MNB1A-like | ||||
TrEMBL | A0A0E0KGC5 | 1e-179 | A0A0E0KGC5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G23930.1 | 1e-179 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-26 | DOF zinc finger protein 1 |