PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G22520.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 249aa    MW: 27436.9 Da    PI: 10.2569
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G22520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37.4e-171050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ri n+ +r  tf kR++g++KKA+EL +LC+++ +++++++
  OPUNC03G22520.1 10 RIINDAKRRATFRKRLKGLMKKASELATLCGVDTCLMVYGE 50
                     899************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.703150IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-18161IPR002100Transcription factor, MADS-box
CDDcd002668.47E-28286No hitNo description
PRINTSPR004047.1E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-23396IPR002100Transcription factor, MADS-box
PfamPF003191.1E-161050IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MARNKVKLQR IINDAKRRAT FRKRLKGLMK KASELATLCG VDTCLMVYGE GEAQVTEVWP  60
SVSEVTRVLE RFKAMPQMEK YKKMTDLEGF VKERIDKLQE QLHKVRRGAD ESETKLLLIQ  120
ALDGRQPGLE GITIEQLTSL GSMVDARLKI VNDRLQKLHE QGLLPASVSL PAMGVLPYTM  180
AGYTVVGEAP IQREGWLMRV ARGIGSLGYG WFRGSGGSST AGTSGDMVQP FNGGSGLPWA  240
NQGISFPPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629573.11e-149agamous-like MADS-box protein AGL80
TrEMBLA0A0E0KFV30.0A0A0E0KFV3_ORYPU; Uncharacterized protein
STRINGOPUNC03G22520.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-33AGAMOUS-like 80